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remove old datamodel javadoc
[jabaws.git] / website / full_javadoc / index-files / index-8.html
diff --git a/website/full_javadoc/index-files/index-8.html b/website/full_javadoc/index-files/index-8.html
index 9772173..b5873d4 100644 (file)
--- a/website/full_javadoc/index-files/index-8.html
+++ b/website/full_javadoc/index-files/index-8.html
@@ -2,12 +2,12 @@
 <!--NewPage-->\r
 <HTML>\r
 <HEAD>\r
-<!-- Generated by javadoc (build 1.6.0_14) on Wed Feb 17 16:46:50 GMT 2010 -->\r
+<!-- Generated by javadoc (build 1.6.0_24) on Fri Aug 12 14:32:36 BST 2011 -->\r
 <TITLE>\r
 H-Index\r
 </TITLE>\r
 \r
-<META NAME="date" CONTENT="2010-02-17">\r
+<META NAME="date" CONTENT="2011-08-12">\r
 \r
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../stylesheet.css" TITLE="Style">\r
 \r
@@ -88,9 +88,27 @@ Method in class compbio.engine.cluster.drmaa.<A HREF="../compbio/engine/cluster/
 <DT><A HREF="../compbio/engine/cluster/drmaa/StatisticManager.html#hasExited()"><B>hasExited()</B></A> - \r
 Method in class compbio.engine.cluster.drmaa.<A HREF="../compbio/engine/cluster/drmaa/StatisticManager.html" title="class in compbio.engine.cluster.drmaa">StatisticManager</A>\r
 <DD>&nbsp;\r
+<DT><A HREF="../compbio/data/sequence/Alignment.html#hashCode()"><B>hashCode()</B></A> - \r
+Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A>\r
+<DD>&nbsp;\r
 <DT><A HREF="../compbio/data/sequence/AlignmentMetadata.html#hashCode()"><B>hashCode()</B></A> - \r
 Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/AlignmentMetadata.html" title="class in compbio.data.sequence">AlignmentMetadata</A>\r
 <DD>&nbsp;\r
+<DT><A HREF="../compbio/data/sequence/FastaSequence.html#hashCode()"><B>hashCode()</B></A> - \r
+Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>\r
+<DD>&nbsp;\r
+<DT><A HREF="../compbio/data/sequence/Range.html#hashCode()"><B>hashCode()</B></A> - \r
+Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</A>\r
+<DD>&nbsp;\r
+<DT><A HREF="../compbio/data/sequence/Score.html#hashCode()"><B>hashCode()</B></A> - \r
+Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</A>\r
+<DD>&nbsp;\r
+<DT><A HREF="../compbio/data/sequence/ScoreManager.html#hashCode()"><B>hashCode()</B></A> - \r
+Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</A>\r
+<DD>&nbsp;\r
+<DT><A HREF="../compbio/data/sequence/ScoreManager.ScoreHolder.html#hashCode()"><B>hashCode()</B></A> - \r
+Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/ScoreManager.ScoreHolder.html" title="class in compbio.data.sequence">ScoreManager.ScoreHolder</A>\r
+<DD>&nbsp;\r
 <DT><A HREF="../compbio/engine/client/CommandBuilder.html#hashCode()"><B>hashCode()</B></A> - \r
 Method in class compbio.engine.client.<A HREF="../compbio/engine/client/CommandBuilder.html" title="class in compbio.engine.client">CommandBuilder</A>\r
 <DD>&nbsp;\r
@@ -105,7 +123,7 @@ Method in class compbio.engine.<A HREF="../compbio/engine/ClusterJobId.html" tit
 <DD>&nbsp;\r
 <DT><A HREF="../compbio/engine/conf/_Key.html#hashCode()"><B>hashCode()</B></A> - \r
 Method in class compbio.engine.conf.<A HREF="../compbio/engine/conf/_Key.html" title="class in compbio.engine.conf">_Key</A>\r
-<DD>&nbsp;\r
+<DD><B>Deprecated.</B>&nbsp;&nbsp;\r
 <DT><A HREF="../compbio/engine/FilePuller.html#hashCode()"><B>hashCode()</B></A> - \r
 Method in class compbio.engine.<A HREF="../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</A>\r
 <DD>&nbsp;\r
@@ -130,20 +148,47 @@ Method in class compbio.metadata.<A HREF="../compbio/metadata/Preset.html" title
 <DT><A HREF="../compbio/metadata/ValueConstrain.html#hashCode()"><B>hashCode()</B></A> - \r
 Method in class compbio.metadata.<A HREF="../compbio/metadata/ValueConstrain.html" title="class in compbio.metadata">ValueConstrain</A>\r
 <DD>&nbsp;\r
+<DT><A HREF="../compbio/pipeline/_jpred/Hit.html#hashCode()"><B>hashCode()</B></A> - \r
+Method in class compbio.pipeline._jpred.<A HREF="../compbio/pipeline/_jpred/Hit.html" title="class in compbio.pipeline._jpred">Hit</A>\r
+<DD>&nbsp;\r
 <DT><A HREF="../compbio/pipeline/_jpred/PScore.html#hashCode()"><B>hashCode()</B></A> - \r
 Method in class compbio.pipeline._jpred.<A HREF="../compbio/pipeline/_jpred/PScore.html" title="class in compbio.pipeline._jpred">PScore</A>\r
 <DD>&nbsp;\r
+<DT><A HREF="../compbio/stat/collector/JobStat.html#hashCode()"><B>hashCode()</B></A> - \r
+Method in class compbio.stat.collector.<A HREF="../compbio/stat/collector/JobStat.html" title="class in compbio.stat.collector">JobStat</A>\r
+<DD>&nbsp;\r
+<DT><A HREF="../compbio/stat/servlet/util/StatCollection.html#hashCode()"><B>hashCode()</B></A> - \r
+Method in class compbio.stat.servlet.util.<A HREF="../compbio/stat/servlet/util/StatCollection.html" title="class in compbio.stat.servlet.util">StatCollection</A>\r
+<DD>&nbsp;\r
 <DT><A HREF="../compbio/engine/FilePuller.html#hasMoreData()"><B>hasMoreData()</B></A> - \r
 Method in class compbio.engine.<A HREF="../compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</A>\r
 <DD>&nbsp;\r
+<DT><A HREF="../compbio/data/sequence/FastaReader.html#hasNext()"><B>hasNext()</B></A> - \r
+Method in class compbio.data.sequence.<A HREF="../compbio/data/sequence/FastaReader.html" title="class in compbio.data.sequence">FastaReader</A>\r
+<DD>\r
 <DT><A HREF="../compbio/engine/client/CommandBuilder.html#hasParam(java.lang.String)"><B>hasParam(String)</B></A> - \r
 Method in class compbio.engine.client.<A HREF="../compbio/engine/client/CommandBuilder.html" title="class in compbio.engine.client">CommandBuilder</A>\r
 <DD>&nbsp;\r
+<DT><A HREF="../compbio/stat/collector/JobStat.html#hasResult()"><B>hasResult()</B></A> - \r
+Method in class compbio.stat.collector.<A HREF="../compbio/stat/collector/JobStat.html" title="class in compbio.stat.collector">JobStat</A>\r
+<DD>&nbsp;\r
 <DT><A HREF="../compbio/engine/cluster/drmaa/StatisticManager.html#hasSignaled()"><B>hasSignaled()</B></A> - \r
 Method in class compbio.engine.cluster.drmaa.<A HREF="../compbio/engine/cluster/drmaa/StatisticManager.html" title="class in compbio.engine.cluster.drmaa">StatisticManager</A>\r
 <DD>&nbsp;\r
+<DT><A HREF="../compbio/stat/collector/JobStat.html#hasStarted()"><B>hasStarted()</B></A> - \r
+Method in class compbio.stat.collector.<A HREF="../compbio/stat/collector/JobStat.html" title="class in compbio.stat.collector">JobStat</A>\r
+<DD>&nbsp;\r
 <DT><A HREF="../compbio/engine/cluster/dundee/_Queue.html#hasTimeLimit()"><B>hasTimeLimit()</B></A> - \r
 Method in enum compbio.engine.cluster.dundee.<A HREF="../compbio/engine/cluster/dundee/_Queue.html" title="enum in compbio.engine.cluster.dundee">_Queue</A>\r
+<DD><B>Deprecated.</B>&nbsp;&nbsp;\r
+<DT><A HREF="../compbio/pipeline/_jpred/Hit.html" title="class in compbio.pipeline._jpred"><B>Hit</B></A> - Class in <A HREF="../compbio/pipeline/_jpred/package-summary.html">compbio.pipeline._jpred</A><DD>&nbsp;<DT><A HREF="../compbio/pipeline/_jpred/Hit.html#Hit()"><B>Hit()</B></A> - \r
+Constructor for class compbio.pipeline._jpred.<A HREF="../compbio/pipeline/_jpred/Hit.html" title="class in compbio.pipeline._jpred">Hit</A>\r
+<DD>&nbsp;\r
+<DT><A HREF="../compbio/pipeline/_jpred/Hit.EvalueComporator.html" title="class in compbio.pipeline._jpred"><B>Hit.EvalueComporator</B></A> - Class in <A HREF="../compbio/pipeline/_jpred/package-summary.html">compbio.pipeline._jpred</A><DD>&nbsp;<DT><A HREF="../compbio/pipeline/_jpred/Hit.EvalueComporator.html#Hit.EvalueComporator()"><B>Hit.EvalueComporator()</B></A> - \r
+Constructor for class compbio.pipeline._jpred.<A HREF="../compbio/pipeline/_jpred/Hit.EvalueComporator.html" title="class in compbio.pipeline._jpred">Hit.EvalueComporator</A>\r
+<DD>&nbsp;\r
+<DT><A HREF="../compbio/pipeline/_jpred/Hit.NumberComporator.html" title="class in compbio.pipeline._jpred"><B>Hit.NumberComporator</B></A> - Class in <A HREF="../compbio/pipeline/_jpred/package-summary.html">compbio.pipeline._jpred</A><DD>&nbsp;<DT><A HREF="../compbio/pipeline/_jpred/Hit.NumberComporator.html#Hit.NumberComporator()"><B>Hit.NumberComporator()</B></A> - \r
+Constructor for class compbio.pipeline._jpred.<A HREF="../compbio/pipeline/_jpred/Hit.NumberComporator.html" title="class in compbio.pipeline._jpred">Hit.NumberComporator</A>\r
 <DD>&nbsp;\r
 </DL>\r
 <HR>\r