update build artefacts

[jabaws.git] / website / index.html

diff --git a/website/index.html b/website/index.html
index 99606e2..fde5fa7 100644 (file)
--- a/website/index.html
+++ b/website/index.html
@@ -19,7 +19,7 @@ page</title>
 <div id="banner">\r
 <table> \r
 <tr><td style="width:158px;"><a href="http://www.dundee.ac.uk"><img src="images/uod_lt_long.gif"  alt="University of Dundee" width="158" height="90" class="logo"  title="University of Dundee" longdesc="http://www.dundee.ac.uk"/></a></td>\r
-<td class="bg"><img src="images/jabaws2.png" alt="JABAWS-2.0:Disorder" width="353" height="67" title="JABAWS-2.0:Disorder"/></td>\r
+<td class="bg"><img src="images/jabaws2.png" alt="JABAWS-2.0" width="265" height="67" title="Java Bioinformatics Analysis Web Services version 2.0"/></td>\r
 <td class="bg"><img src="images/banner_right.png" alt="Disorder" width="200" height="80"/></td>\r
 </tr>\r
 </table>\r
@@ -32,17 +32,18 @@ page</title>
  <a href="quick_start.html">Getting Started</a> \r
  <a href="man_about.html">Manual</a> \r
  <a href="download.html">Download</a> \r
- <a href="contacts.html">Contact Us</a>\r
  <a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
+ <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
+ <a href="contacts.html">Contact Us</a>\r
  <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a></div>\r
 \r
 <!-- panel end-->\r
 <div id="content">\r
 <h2 id="headtitle">JABAWS 2</h2>\r
-<p style="color:black; font-weight:normal; text-align:left;"><span style="border-bottom:dotted 1px #666" title="JAva Bioinformatics Analysis Web Services version 2">JABAWS<sup>2.0</sup>:Disorder</span> is  free software which provides web services for prediction of protein disorder, multiple sequence alignment and amino acid conservation conveniently packaged to run on your local computer, server or cluster. Disorder prediction services are based on <a href="http://dis.embl.de/">DisEMBL</a>, <a href="http://iupred.enzim.hu">IUPred</a>, <a href="http://www.strubi.ox.ac.uk/RONN">Ronn</a>, <a href="http://globplot.embl.de/">GlobPlot</a>, conservation is calculated by <a href="http://www.compbio.dundee.ac.uk/aacon">AACon</a>, multiple sequence alignment services are the <a href="http://www.clustal.org/omega">Clustal Omega</a>, <a href="http://www.clustal.org/clustal2">Clustal W</a>, <a href=\r
+<p style="color:black; font-weight:normal; text-align:left;"><span style="border-bottom:dotted 1px #666" title="JAva Bioinformatics Analysis Web Services">JABAWS</span> is  free software which provides web services for prediction of protein disorder, multiple sequence alignment and amino acid conservation conveniently packaged to run on your local computer, server or cluster. JABAWS v2.0 includes new disorder prediction services based on <a href="http://dis.embl.de/">DisEMBL</a>, <a href="http://iupred.enzim.hu">IUPred</a>, <a href="http://www.strubi.ox.ac.uk/RONN">Ronn</a>, <a href="http://globplot.embl.de/">GlobPlot</a> and protein sequence alignment conservation measures calculated by <a href="http://www.compbio.dundee.ac.uk/aacon">AACon</a>. A new multiple sequence alignment service for <a href="http://www.clustal.org/omega">Clustal Omega</a> is also provided, in addition to standard JABAWS:MSA services for <a href="http://www.clustal.org/clustal2">Clustal W</a>, <a href=\r
 "http://align.bmr.kyushu-u.ac.jp/mafft/software/">MAFFT</a>, <a href="http://www.drive5.com/muscle">MUSCLE</a>, <a href=\r
 "http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"> TCOFFEE</a> and <a href="http://probcons.stanford.edu/">PROBCONS</a>. \r
-<span style="color:black; font-weight:normal; text-align:left;">JABA Web Services can be accessed from the <a href="http://www.jalview.org">Jalview</a> multiple sequence alignment editor and analysis workbench  to allow multiple        alignment calculations limited only by your own local computing        resources.</span></p>\r
+<span style="color:black; font-weight:normal; text-align:left;">JABA Web Services can be accessed from the <a href="http://www.jalview.org">Jalview</a> desktop application and provide multiple alignment and sequence analysis calculations limited only by your own local computing resources.</span></p>\r
 \r
 <div id="mainpagefeatures">\r
 <table>\r
@@ -51,7 +52,7 @@ page</title>
   <div class="brick_header"><h2>For Users</h2></div>\r
     <div class="brick_content">\r
         <strong>The Server: </strong><a href="http://www.compbio.dundee.ac.uk/jabaws/archive/jabaws-vm.zip">JABAWS Virtual Appliance:</a> (520M)\r
-       or <a href="man_awscloud.html" title="Amazon Machine Image">JABAWS AMI</a> for the Amazon EC2 Cloud<br/>\r
+       or <a href="man_awscloud.html">use JABAWS on Amazon Webservices Cloud</a><br/>\r
        <strong>The Client: </strong><a href="http://www.jalview.org/download.html">Jalview</a> (18M)\r
                <p>To use JABA Web Services on most operating systems, just download and <a href="manual_qs_va.html#qsc">install</a> the JABAWS Virtual Appliance (VA) or even easier - just start JABAWS machine on the cloud and point Jalview at it!</p>\r
      </div>\r
@@ -106,7 +107,7 @@ title="http://www.compbio.dundee.ac.uk/jabaws/ClustalWS?" rel=
 </div>\r
 \r
 <!-- content end-->\r
-<div id="copyright">Last update: 2 August 2011<br />\r
+<div id="copyright">Last update: 16 September 2011<br />\r
  This site is best viewed in Firefox 3.6, Google Chrome 10, Internet Explorer 8 or above </div>\r
 </div>\r
 \r