JWS-109 General improvements and further fixes to typos and proofreading.

[jabaws.git] / website / index.jsp

diff --git a/website/index.jsp b/website/index.jsp
index 0db7a64..c80ffb3 100644 (file)
--- a/website/index.jsp
+++ b/website/index.jsp
@@ -45,7 +45,7 @@
                 </p>
                 <p class="justify">
                     JABAWS web-services can be accessed through the <a href="http://www.jalview.org">Jalview</a> desktop
-                    graphical user interface (GUI) (version 2.8 onwards) or the command line interface (CLI) client.
+                    graphical user interface (GUI) (version 2.8 onwards) or the JABAWS Command Line Interface (CLI) client.
                     In this way you can perform computations on your sequences using the publicly available servers
                     running at the University of Dundee. Alternatively, JABAWS installation allows you to perform analysis
                     limited only by your own computing resources, by running it in your local computer, server or cluster.
@@ -139,24 +139,24 @@
             <div class="panel-body">
 
                 <p class="justify">
-                    You can access our public JABAWS web services with the
-                    <a href="${pageContext.request.contextPath}/getting_started.jsp#client">command line client</a>,
-                    <a href="http://www.jalview.org/">Jalview</a>,
-                    or with your own program. The latest versions of Jalview (version 2.9 or later) are fully compatible
+                    You can access our public JABAWS web services with <a href="http://www.jalview.org/">Jalview</a>,
+                    <a href="${pageContext.request.contextPath}/getting_started.jsp#client">JABAWS CLI</a>, or
+                    <a href="${pageContext.request.contextPath}/docs/develop.html#accessing-jabaws-from-your-program">with your own program</a>.
+                    The latest versions of Jalview (version 2.9 or later) are fully compatible
                     with JABAWS 2.2 and are configured to use the public JABAWS server by default.
                 </p>
                 <ul>
                     <li>The JABAWS public web services address is <strong><a href="http://www.compbio.dundee.ac.uk/jabaws">http://www.compbio.dundee.ac.uk/jabaws</a></strong> </li>
-                    <li>A detailed web services description is available from here:
+                    <li>A detailed description of the JABAWS web services is available from here:
                         <a href="${pageContext.request.contextPath}/RegistryWS?"
                            title="${pageContext.request.contextPath}/RegistryWS?" rel=nofollow">WSDL List</a></li>
                 </ul>
                 <p class="justify">
                     These web services accept submissions of <strong>less than one thousand sequences</strong>.
                     Should you find this to be insufficient for your needs, or if you are concerned about privacy
-                    or on an unreliable network connection, then you can
-                    <a href="${pageContext.request.contextPath}/download.jsp">download</a> and
-                    run the JABAWS Server on your own hardware.
+                    or you are on an unreliable network connection, then you can
+                    download and
+                    run the <a href="${pageContext.request.contextPath}/getting_started.jsp#war">JABAWS WAR</a> on your own hardware.
                 </p>
             </div>
         </div>
@@ -193,7 +193,7 @@
                 <p class="justify">
                     Peter V. Troshin, James B. Procter and Geoffrey J. Barton -
                     Java Bioinformatics Analysis Web Services for Multiple Sequence Alignment - JABAWS:MS
-                    <em>Bioinformatics</em> 2011. 27 (14): 2001-2002. doi: <a href="http://bioinformatics.oxfordjournals.org/content/early/2011/05/18/bioinformatics.btr304.abstract?keytype=ref&amp;ijkey=gd0DwuYBzFRhe4T">
+                    <em>Bioinformatics</em> 2011. 27 (14): 2001-2002. doi: <a href="https://doi.org/10.1093/bioinformatics/btr304">
                     10.1093/bioinformatics/btr304</a>.
                 </p>
             </div>