Adding new web service, getting rid of virtual box in docs

[jabaws.git] / website / man_client.html

diff --git a/website/man_client.html b/website/man_client.html
index ce35521..a4b13de 100644 (file)
--- a/website/man_client.html
+++ b/website/man_client.html
@@ -15,11 +15,12 @@
 <div id="page">\r
 <div id="banner">\r
 <table> \r
-<tr><td style="width:130px;"><a href="http://www.dundee.ac.uk"><img src="images/uod_lt.gif"  alt="University of Dundee" class="logo"  title="University of Dundee" longdesc="http://www.dundee.ac.uk"/></a></td>\r
-<td class="bg"><img src="images/jabaws.png" title="JABAWS:MSA" alt="JABAWS:MSA"/></td>\r
-<td class="bg"><img src="images/align.png"/></td>\r
+<tr><td style="width:158px;"><a href="http://www.dundee.ac.uk"><img src="images/uod_lt_long.gif"  alt="University of Dundee" width="158" height="90" class="logo"  title="University of Dundee" longdesc="http://www.dundee.ac.uk"/></a></td>\r
+<td class="bg"><img src="images/jabaws2.png" alt="JABAWS-2.0:Disorder" width="353" height="67" title="JABAWS-2.0:Disorder"/></td>\r
+<td class="bg"><img src="images/banner_right.png" alt="Disorder" width="200" height="80"/></td>\r
 </tr>\r
-</table></div><!-- banner end-->\r
+</table>\r
+</div><!-- banner end-->\r
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 <div id="wrapper">\r
 <div id="panel"><a href="index.html">Home</a> \r
@@ -32,12 +33,15 @@
                <a href="man_configuration.html" >Server<br/>\r
                Configuration</a>\r
                <a class="selected" href="man_client.html" title="JABAWS Command Line Client">CMD Client</a>\r
+               <a href="man_stats.html" title="JABAWS Usage Statistics">Usage Statistics</a>\r
                <a href="man_dev.html" title="Accessing JABAWS from your program">Accessing<br/>\r
                JABAWS</a>      \r
+               <a href="man_server_dev.html" >JABAWS Development</a>\r
        </div>\r
 <a href="download.html">Download</a> \r
 <a href="contacts.html">Contact Us</a>\r
-<a href="http://www.compbio.dundee.ac.uk">Barton Group</a> \r
+<a href="PublicAnnualStat" title="JABAWS usage statistics">Usage Statistics</a>\r
+<a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a>\r
 </div>\r
 \r
 <!-- panel end-->\r
@@ -48,7 +52,7 @@
 <p>The command line client comes as a part of <a href="download.html"> client package</a> which you are welcome to download. The command line client can be used to align sequences using any of JABAWS supported web services. The client is OS independent and supports most of the functions which can be accessed programmatically via <a href="dm_javadoc/index.html">JABAWS API</a>. Using this client you could align sequences using presets or custom parameters, please see examples of this below. Here is the list of options supported by the command line client. </p>\r
 <span class="code"><strong>Usage:</strong> java -jar &lt;path_to_jar_file&gt; -h=host_and_context -s=serviceName ACTION [OPTIONS]<br />\r
 -h=&lt;host_and_context&gt; - a full URL to the JABAWS web server including context path e.g. http://10.31.10.159:8080/ws<br />\r
--s=&lt;ServiceName&gt; - one of [MafftWS, MuscleWS, ClustalWS, TcoffeeWS, ProbconsWS]\r
+-s=&lt;ServiceName&gt; - one of [MafftWS, MuscleWS, ClustalWS, ClustalOWS, TcoffeeWS, ProbconsWS, AAConWS, JronnWS, DisemblWS, GlobPlotWS, IUPredWS]\r
 </p>\r
 <br />\r
 <strong>ACTIONS:</strong><br />\r