<!DOCTYPE html PUBLIC "XHTML 1.0 Strict" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">\r
<html xmlns="http://www.w3.org/1999/xhtml">\r
<head>\r
-<meta name="Last-modified" content="Mon, 4 Apr 2011 12:00:00 GMT"/>\r
+<meta name="Last-modified" content="Fri, 28 Jun 2013 12:00:00 GMT"/>\r
<title>Java Bioinformatics Analyses Web Services (JABAWS) manual - getting started</title>\r
<link href="ws.css" rel="stylesheet" type="text/css" media="screen, projection, handheld, tv" />\r
<link rel="stylesheet" type="text/css" media="print" href="print.css"/>\r
-\r
<script type="text/javascript" src="prototype-1.6.0.3.js"></script>\r
</head>\r
+\r
<body>\r
<div id="page">\r
<div id="banner">\r
-<table> \r
-<tr><td style="width:158px;"><a href="http://www.dundee.ac.uk"><img src="images/uod_lt_long.gif" alt="University of Dundee" width="158" height="90" class="logo" title="University of Dundee" longdesc="http://www.dundee.ac.uk"/></a></td>\r
-<td class="bg"><img src="images/jabaws2.png" alt="JABAWS-2.0" title="Java Bioinformatics Analysis Web Services version 2.0"/></td>\r
-<td class="bg"><img src="images/banner_right.png" alt="Disorder" width="200" height="80"/></td>\r
-</tr>\r
+<table>\r
+ <tr>\r
+ <td style="width:158px;"><a href="http://www.dundee.ac.uk"><img src="images/uod_lt_long.gif" width="158" height="90" alt="University of Dundee" class="logo" title="University of Dundee" longdesc="http://www.dundee.ac.uk"/></a></td>\r
+ <td class="bg"><img src="images/jabaws201-2.png" width="263" height="60" alt="JABAWS-2.0.1" title="Java Bioinformatics Analysis Web Services version 2.0.1"/></td>\r
+ <td class="bg"><img src="images/banner_right.png" alt="Disorder" width="200" height="80"/></td>\r
+ </tr>\r
</table>\r
-</div><!-- banner end-->\r
+</div>\r
+<!-- banner end-->\r
+\r
<div id="wrapper">\r
<div id="panel">\r
<a href="index.html">Home</a>\r
- <a class="selected" href="quick_start.html">Getting Started</a> \r
- <a href="man_about.html">Manual</a> \r
- <a href="download.html">Download</a>\r
- <a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
- <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
- <a href="contacts.html">Contact Us</a>\r
- <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a></div>\r
-\r
-<!-- panel end--> \r
+ <a class="selected" href="quick_start.html">Getting Started</a> \r
+ <a href="man_about.html">Manual</a> \r
+ <a href="http://www.compbio.dundee.ac.uk/download">Download</a>\r
+ <a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
+ <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
+ <a href="contacts.html">Contact Us</a>\r
+ <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a></div>\r
+<!-- panel end-->\r
\r
<div id="content">\r
-\r
<h2 id="headtitle">Getting Started</h2>\r
-\r
<h3><a name="whichjaba" id="whichjaba"></a>Choose a JABAWS distribution</h3>\r
-\r
<table id="choicematrix">\r
<tr>\r
<th>I want to use JABAWS for...</th>\r
<th>Quick Guide</th>\r
</tr>\r
<tr>\r
- <td>Running Muptiple Sequence Alignments through Jalview on my <strong>own</strong> computer</td>\r
- <td><a href="manual_qs_va.html#qsc">JABAWS Virtual Appliance (VA)</a></td>\r
+ <td>Running Muptiple Sequence Alignments through Jalview on my <strong>own</strong> computer</td>\r
+ <td><a href="manual_qs_va.html#qsc">JABAWS Virtual Appliance (VA)</a></td>\r
</tr>\r
<tr>\r
<td>Running JABAWS on the <strong>cloud</strong>, for one or many users</td>\r
- <td><a href="man_awscloud.html">JABAWS on the Amazon cloud </a></td>\r
+ <td><a href="manual_qs_amazon.html#qsc">JABAWS on the Amazon cloud </a></td>\r
</tr>\r
<tr>\r
- <td>Running JABAWS for my group, lab, or organization on the <strong>local</strong> infrastructure </td>\r
- <td><a href="manual_qs_war.html#qsc">JABAWS Web Application aRchive (WAR)</a></td>\r
+ <td>Running JABAWS for my group, lab, or organization on the <strong>local</strong> infrastructure </td>\r
+ <td><a href="manual_qs_war.html#qsc">JABAWS Web Application aRchive (WAR)</a></td>\r
</tr>\r
<tr>\r
- <td>Accessing a JABAWS server from my own code</td>\r
- <td><a href="manual_qs_client.html#qsc">JABAWS Java Client</a></td>\r
+ <td>Accessing a JABAWS server from my own code</td>\r
+ <td><a href="manual_qs_client.html#qsc">JABAWS Java Client</a></td>\r
</tr>\r
</table>\r
\r
\r
-\r
-\r
<a name="qsc"/>\r
<h3><a name="client"/>The JABAWS command line client</h3>\r
-<ul><li><a href=\r
-"http://www.compbio.dundee.ac.uk/jabaws/archive/min-jaba-client.jar">Download the Client Jar</a> (80 K)</li>\r
-</ul>\r
-<p>This is a single java archive which contains the JABAWS command line client. \r
-It requires Java version 1.6 to run, and allows anyone who wants to connect \r
-to and to use JABAWS from their own software. \r
-You can read more about how to use command line client <a href="man_client.html">in the CMD Client</a> section of the manual. \r
-You can also get command line help by changing to the directory where you downloaded the client jar, and typing:\r
-<ul>\r
- <li><span class="hightlight">java -jar jaba-client.jar</span></li>\r
+<ul><li><a href="http://www.compbio.dundee.ac.uk/download/get?id=min-jaba-client-2.0.jar">Download the Client Jar</a> (80 K)</li>\r
</ul>\r
-<p>A JABAWS server's Web Services are WS-I compliant. This means that you can access them from any \r
-language that has libraries or functions for consuming interoperable SOAP web services.\r
-<!-- PETER TODO Provide list of libraries for different languages --></p>\r
-</div> \r
-<!-- about end-->\r
-</div>\r
-<!-- content end--> \r
-<div id="copyright">Last update: 16 September 2011<br/>\r
-Peter Troshin, Jim Procter and Geoff Barton, The Barton Group, University of Dundee, UK</div>\r
+<p>\r
+ This is a single java archive which contains the JABAWS command line client. It requires Java \r
+ version 1.6 to run, and allows anyone who wants to connect to and to use JABAWS from their own \r
+ software. You can read more about how to use command line client <a href="man_client.html">in \r
+ the CMD Client</a> section of the manual. You can also get command line help by changing to \r
+ the directory where you downloaded the client jar, and typing:\r
+ <ul>\r
+ <li><span class="hightlight">java -jar jaba-client.jar</span></li>\r
+ </ul>\r
+\r
+<p>\r
+ A JABA Web Services are WS-I compliant. This means that you can access them from any \r
+ language that has libraries or functions for consuming interoperable SOAP web services.\r
+ <!-- TODO Provide list of libraries for different languages -->\r
+</p>\r
+</div><!-- about end-->\r
+</div><!-- content end--> \r
+<div id="copyright">Last update: 28 June 2013<br/>Sasha Sherstnev, Peter Troshin, Jim Procter and Geoff Barton, The Barton Group, University of Dundee, UK</div>\r
</div><!-- wrapper end-->\r
</div> <!-- page end-->\r
\r
+\r
<!-- Google analitics -->\r
<script type="text/javascript">\r
var gaJsHost = (("https:" == document.location.protocol) ? "https://ssl." : "http://www.");\r
</script>\r
</body>\r
</html>\r
-\r