X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=binaries%2Fsrc%2Fdisembl%2FTisean_3.0.1%2Fsource_c%2Fav-d2.c;fp=binaries%2Fsrc%2Fdisembl%2FTisean_3.0.1%2Fsource_c%2Fav-d2.c;h=6f0205e69d3b835005ecad2e25baa125595c63aa;hb=a17c780665c109829426e062df4d75ff950725e0;hp=0000000000000000000000000000000000000000;hpb=f47da0247a9f9a8ac55571234064a0d3ded06b6c;p=jabaws.git diff --git a/binaries/src/disembl/Tisean_3.0.1/source_c/av-d2.c b/binaries/src/disembl/Tisean_3.0.1/source_c/av-d2.c new file mode 100644 index 0000000..6f0205e --- /dev/null +++ b/binaries/src/disembl/Tisean_3.0.1/source_c/av-d2.c @@ -0,0 +1,188 @@ +/* + * This file is part of TISEAN + * + * Copyright (c) 1998-2007 Rainer Hegger, Holger Kantz, Thomas Schreiber + * + * TISEAN is free software; you can redistribute it and/or modify + * it under the terms of the GNU General Public License as published by + * the Free Software Foundation; either version 2 of the License, or + * (at your option) any later version. + * + * TISEAN is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with TISEAN; if not, write to the Free Software + * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA + */ +/*Author: Rainer Hegger Last modified: Sep 3, 1999 */ +#include +#include +#include +#include +#include +#include "routines/tsa.h" + +#define WID_STR "Smoothes the output of the d2 program" + +#define MAXLENGTH 1000 + +unsigned int maxdim=UINT_MAX,mindim=1; +unsigned int verbosity=0xff; +int aver=1; +char rescaled=0; +char stout=1; +char *outfile=NULL; +char *infile=NULL; + +void show_options(char *progname) +{ + what_i_do(progname,WID_STR); + fprintf(stderr,"Usage: %s [options]\n",progname); + fprintf(stderr,"Options:\n"); + fprintf(stderr,"Everything not being a valid option will be interpreted" + " as a possible datafile.\nStdin does NOT work.\n"); + fprintf(stderr,"\t-m dimension to start with [Default: 1]\n"); + fprintf(stderr,"\t-M dimension to end with [Default: whole file]\n"); + fprintf(stderr,"\t-a n average over (2n+1) values [Default: 1]\n"); + fprintf(stderr,"\t-E use rescaled data for the length scales\n\t\t" + "[Default: use units of data]\n"); + fprintf(stderr,"\t-o name of output file [Default: stdout,\n\t\t" + "-o without value means 'datafile'.av]\n"); + fprintf(stderr,"\t-V verbosity level [Default: 1]\n\t\t" + "0='only panic messages'\n\t\t" + "1='+ input/output messages'\n"); + fprintf(stderr,"\t-h show these options\n"); + exit(0); +} + +void scan_options(int n,char **in) +{ + char *out; + + if ((out=check_option(in,n,'m','u')) != NULL) + sscanf(out,"%u",&mindim); + if ((out=check_option(in,n,'M','u')) != NULL) + sscanf(out,"%u",&maxdim); + if ((out=check_option(in,n,'a','u')) != NULL) + sscanf(out,"%u",&aver); + if ((out=check_option(in,n,'V','u')) != NULL) + sscanf(out,"%u",&verbosity); + if ((out=check_option(in,n,'E','n')) != NULL) + rescaled=1; + if ((out=check_option(in,n,'o','o')) != NULL) { + stout=0; + if (strlen(out) > 0) + outfile=out; + } +} + +int main(int argc,char **argv) +{ + char instr[1024]; + char *form1="%lf%lf",*form2="%*lf%lf%lf"; + char empty=0; + unsigned int howmany,size=1; + int j,k; + long dim; + double *eps,*y; + double avy,aveps,norm; + FILE *file,*fout=NULL; + + if ((argc < 2) || scan_help(argc,argv)) + show_options(argv[0]); + + scan_options(argc,argv); +#ifndef OMIT_WHAT_I_DO + if (verbosity&VER_INPUT) + what_i_do(argv[0],WID_STR); +#endif + + infile=search_datafile(argc,argv,0L,verbosity); + if (infile == NULL) { + fprintf(stderr,"You have to give a datafile. Exiting!\n"); + exit(127); + } + if (outfile == NULL) { + check_alloc(outfile=(char*)calloc(strlen(infile)+4,(size_t)1)); + sprintf(outfile,"%s.av",infile); + } + + check_alloc(eps=(double*)malloc(sizeof(double)*MAXLENGTH)); + check_alloc(y=(double*)malloc(sizeof(double)*MAXLENGTH)); + + file=fopen(infile,"r"); + + if (!stout) { + test_outfile(outfile); + fout=fopen(outfile,"w"); + if (verbosity&VER_INPUT) + fprintf(stderr,"Opened %s for writing\n",outfile); + } + else { + if (verbosity&VER_INPUT) + fprintf(stderr,"Writing to stdout\n"); + } + + if (mindim > maxdim) + mindim=maxdim; + norm=2.0*aver+1.0; + + while (fgets(instr,1024,file) != NULL) { + if (strlen(instr) != 1) { + if (instr[0] == '#') { + if (strstr(instr,"m= ") != NULL) { + sscanf(instr,"%*s %ld",&dim); + if ((dim >= mindim) && (dim <= maxdim)) { + howmany=0; + empty=0; + do { + if (fgets(instr,1024,file) == NULL) + exit(127); + if (strlen(instr) == 1) + empty=1; + if (!empty && (instr[0] != '#')) { + if (!rescaled) + sscanf(instr,form1,&eps[howmany],&y[howmany]); + else + sscanf(instr,form2,&y[howmany],&eps[howmany]); + howmany++; + if (!(howmany%MAXLENGTH)) { + check_alloc(realloc(eps,size*MAXLENGTH*sizeof(double))); + check_alloc(realloc(y,size*MAXLENGTH*sizeof(double))); + size++; + } + } + } while (!empty); + for (k=aver;k