X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=examples%2Fapplets.html;h=34118b83505367a858e143b3b5e30cebdded35e9;hb=aafcc446eb4b421b7c6362afa7afa7c6f6db8b87;hp=21ed203e0478ef3020aa0853d950b77efe34f525;hpb=b72f4090d5f4b06bbe6c9bace36bed652a350b82;p=jalview.git diff --git a/examples/applets.html b/examples/applets.html old mode 100755 new mode 100644 index 21ed203..34118b8 --- a/examples/applets.html +++ b/examples/applets.html @@ -1,137 +1,205 @@ -
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- Jalview comes in two distinct flavours. The applet version runs in web browsers and is a useful interactive - display for precalculated alignments, features and annotations files. - It does not have the full functionality of the main application, such - as making images, saving files, running web service jobs due to security - restrictions imposed on applets. -For more information on how to use the applet in your - website, see full list of applet - parameters. -Pressing one of the buttons below will load up JalviewLite, a cut down version - of Jalview, which runs within your web browser. - Ferredoxins, chloroplast precursor related UniRef50
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For more JalviewLite examples, follow the links below.
-Quick Links to jars for example:
jalviewApplet.jar and JmolApplet.jar
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+ + | +User Defined Colours, loads an associated + Newick format tree file which is used to sort the alignment, and + group consensus and sequence logos are shown below the alignment. | +
+ | +Displays a features file on the alignment | +
+ | +Associates PDB file 1GAQ with sequence + FER1_MAIZE | +
+ | +Displays a Multiple Sequence Alignment + Based JNet Prediction for a Sequence | +
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+ | +Displays an RFAM RNA fold family with + secondary structure annotation | +
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+ + | +Displays a split window view showing aligned protein
+ and a reconstructed cDNA alignment. Proteins were aligned with Muscle (version 3.8.31, + via the Jalview Desktop). Data retrieved from Uniprot and + ENA, after Thornton, Need and Crews, Science 19 + September 2003: 301 (5640), 1714-1717 + |
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