Phyre 2 alignment of FER_CAPAN_1-144 with d1awda

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd1awda_.10.alig.html;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd1awda_.10.alig.html;h=d04a44f5584e346e36dfbcbe2865040279d77625;hb=207b06de28859536277608ad94897eaa526b1279;hp=0000000000000000000000000000000000000000;hpb=8537d486848be3e97578248dae6bede12e343fe1;p=jalview.git diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1awda_.10.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1awda_.10.alig.html new file mode 100644 index 0000000..d04a44f --- /dev/null +++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1awda_.10.alig.html @@ -0,0 +1,249 @@ + +Phyre 2 alignment of FER_CAPAN_1-144 with d1awda_ + + + + + + + + + + + +

+
+ + + + + +
Job Description FER_CAPAN_1-144
Confidence 99.94% Date Wed Jan 4 12:02:18 GMT 2017
Rank 10 Aligned Residues 93
% Identity 68% Template d1awda_
SCOP info beta-Grasp (ubiquitin-like) + 2Fe-2S ferredoxin-like + 2Fe-2S ferredoxin-related +
Resolution 1.40
Model Dimensions (Å) X:29.316 Y:32.498 Z:23.511 +
+

+ + + + +

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

+

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	K	V	K	L	I	T	P	D	G	P	I	E	F	D	C	P	D	N	V	Y	I	L	D	Q	A	E	E	A	G	H	D	L	P	Y	S	C	R	A	G	S	C	S	S	C	A	G	K	I	A	G	G	A	V	D	Q	T	D	G	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence	Y	K	V	T	L	K	T	P	S	G	E	E	T	I	E	C	P	E	D	T	Y	I	L	D	A	A	E	E	A	G	L	D	L	P	Y	S	C	R	A	G	A	C	S	S	C	A	G	K	V	E	S	G	E	V	D	Q	S	D	Q	S
Template Known Secondary structure								T	T									T	T	S									T	T						S	S	S	S	S	S	S	S	T	T							S					T	T
Template Predicted Secondary structure
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60

	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	L	D	D	D	Q	L	E	E	G	W	V	L	T	C	V	A	Y	P	Q	S	D	V	T	I	E	T	H	K	E	A	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	F	L	D	D	A	Q	M	G	K	G	F	V	L	T	C	V	A	Y	P	T	S	D	V	T	I	L	T	H	Q	E	A	A	L
Template Known Secondary structure	S	S							T	T				G	G	G				S	S									G	G	G	G
Template Predicted Secondary structure
Template SS confidence
	61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.