X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=help%2Fhelp%2Fhtml%2FwhatsNew.html;h=57aff06e2a3deac2dafc15bca0bc940b506e247c;hb=dd91395fac6acce3696a962e03fb932d1b8c66d5;hp=0f0c7f1b747950a5cb60530e7ee2b8fe441182db;hpb=cfcd397b19f70fb39d6d21437db8eb6ffcac3914;p=jalview.git diff --git a/help/help/html/whatsNew.html b/help/help/html/whatsNew.html index 0f0c7f1..57aff06 100755 --- a/help/help/html/whatsNew.html +++ b/help/help/html/whatsNew.html @@ -24,58 +24,72 @@
- Jalview 2.11.1.0
+ Welcome to Jalview Version $$Version-Rel$$ !!
- Jalview 2.11.1.0 is the first minor release for the 2.11 series. - Along with a number of critical bug fixes and improvements it brings - new functionality for mapping sequence features between CDS and - Protein alignments. It is also the first release made under a new four - number versioning scheme, which will allow us to keep track of - patches and bug fixes. + This Jalview release provides support for two popular 3D structure + visualisation tools, new features for discovery of 3D structures, + improved platform integration and a new command line tool allowing + Jalview to be more easily called from scripts.
-
- See the 2.11.1.0
- release notes for full details of bugs fixed and new known issues.
+ View predicted protein structures via 3D-Beacons
+ Jalview 2.11.2's Structure
+ Chooser includes a client for the 3D-Beacons Network. Launched in
+ 2021, the 3D-Beacons network (www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/)
+ provides a central point for the retrieval of predicted and observed
+ 3D structures for sequences in Uniprot, including homology models
+ from Swiss-model and deep learning based predictions from the EBI's
+ Alphafold database (Orengo et al. 2020, doi:10.12688/f1000research.20559.1).
- JalviewJS News
With the release of Jalview 2.11.1.0,
- the team are now focused on bringing JalviewJS to full production.
- To follow our progress take a look at http://www.jalview.org/jalview-js/
- and follow updates on our new JalviewJS
- Releases github repository.
+ Support for viewing structures with ChimeraX and
+ Pymol
Jalview's 3D structure viewer system has been
+ re-architected to allow easier integration of external structure
+ viewers, and takes advantage of the strucViz2 Chimera communications
+ library developed by Scooter Morris (doi:10.1093/bioinformatics/btm329).
+ The Structures
+ Preferences tab provides new options allowing ChimeraX and
+ Pymol to be used for visualising external 3D structures. Views
+ from all structure viewers are saved in Jalview Projects, allowing
+ them to be shared with others using Jalview 2.11.2 or later,
+ providing they have the same viewer installed and configured to be
+ used with Jalview.
Jalview
+ 2.11.2 has been tested with Pymol 2.5.0 (community) and 2.5.2
+ (incentive). For ChimeraX, we recommend using v1.3 or later.
Other highlights include:
++ For the full release notes, see the Jalview 2.11.2.0 + release notes. +
+
+ Known Issues
The following known issues will
+ be addressed in a minor patch release.
+
+