X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=help%2FhelpTOC.xml;h=4ce98922ca1089f0ac716a59ea809160c9b71c0c;hb=954e15a8fc1bba61d7894cd2d137f50ed7038545;hp=4a32606d82bfa551f0d359ab5d49f7c2066f7c75;hpb=a7c05fbd524e554ffccdd84286cf12f7dfda6990;p=jalview.git

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index 4a32606..4ce9892 100755
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="ISO-8859-1"  ?>
-<!-- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2) * 
-	Copyright (C) 2014 The Jalview Authors * * This file is part of Jalview. 
+<!-- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) * 
+	Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. 
 	* * Jalview is free software: you can redistribute it and/or * modify it 
 	under the terms of the GNU General Public License * as published by the Free 
 	Software Foundation, either version 3 * of the License, or (at your option) 
@@ -29,6 +29,7 @@
 		<tocitem text="Making Figures" target="export" />
 		<tocitem text="Hidden Regions" target="hiddenRegions" />
 		<tocitem text="Multiple Views" target="multipleviews" />
+		<tocitem text="Split Frame View" target="splitframe" />
 		<tocitem text="Viewing Trees" target="treeviewer" expand="false" />
 		<tocitem text="Fetching Sequences" target="seqfetch" />
 		<tocitem text="Nucleic Acid Support" target="nucleicAcids" expand="false">
@@ -90,6 +91,7 @@
 			<tocitem text="Tree/PCA Input Data" target="recoverInputdata" />
 			<tocitem text="Pairwise Alignments" target="pairwise" />
 			<tocitem text="Remove Redundancy" target="redundancy" />
+			<tocitem text="Select Column by Annotation" target="calcs.annotation" />
 		</tocitem>
 		<tocitem text="Sequence Annotations" target="seqannots"	expand="true">
 			<tocitem text="Annotation from Structure" target="xsspannotation" expand="false" />
@@ -128,9 +130,7 @@
 			</tocitem>
 		</tocitem>
 		<tocitem text="Preferences" target="preferences" />
-		<tocitem text="Memory Settings" target="memory" expand="false">
-			<tocitem text="JNLP with extra memory parameters" target="jalviewjnlp" />
-		</tocitem>
+		<tocitem text="Memory Settings" target="memory" expand="false"/>
 		<tocitem text="Command Line" target="commandline" expand="false">
 			<tocitem text="Command Line Arguments" target="clarguments" />
 			<tocitem text="Groovy Shell" target="groovy" />