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-
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-Select/Hide Columns by Annotation
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- Select/Hide Columns by Annotation
-
- From Jalview 2.9 columns of an alignment can be filtered using
- any annotation row added to that alignment.
- To carry out this operation, navigate to "Select→Select/Hide Columns by Annotation..." to bring
- up the 'Select/Hide by Annotation' window. The filter options vary depending
- on the type of annotation selected. If an annotation that has a numeric
- values is selected, the threshold filter option is activated as seen in the
- figure on the right below, otherwise the dialog will exclude the threshold filter option as seen in the figure on the left.
-
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-
-
-  |
-  |
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-
-
-
-
- - The target annotation row can be selected using the drop-down option menu in the top-most part of the window.
-
- - Search Filter
-
- - When a text is entered in the text box within the Search
- Filter section, the 'Display Label' and 'Description'
- options becomes enabled for selection.
- - On selecting any of the options, a regular expression
- search (RegEx) is executed on the specified field of the current
- annotation row selected, and the matching columns will be highlighted
- in the alignment.
-
- - Structure Filter
-
- - Alignment columns can also be filtered by the type of
- secondary structure present in a target annotation row.
- - This can be achieved by ticking the type of structure you
- wish to filter by under the structures filter section.
-
- - Threshold Filter
-
- - This filter is only activated for annotation which contain
- numeric values
- - Select whether to filter the alignment above or below an
- adjustable threshold with the selection box within the threshold
- filter section.
- - Change the threshold value with the slider, or enter the
- exact value in the text box.
-
- - Actions
-
- - The 'Select' and 'Hide' radio buttons
- determines the action that will be carried out on the matching
- columns in the alignment during the filtering process.
- - The default option is 'Select' and this simply
- enables column selection on the matching alignment column.
- - While the 'Hide' option enables the matching columns to
- be hidden automatically during the filtering process.
- - The 'Ok' button applies the filter when clicked.
- - And finally, the 'Cancel' button restores the alignment to its previous state before any filtering was applied.
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-