X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=help%2Fhtml%2Fcalculations%2Fconsensus.html;h=df8bdac38764f1711ab4ecd05a2510a7ada40f82;hb=45f546c71f94606ab43389d596139606bd001656;hp=12d832fb5b5c8cba9d7fc4fbe0ab4d2ef4eb050d;hpb=865a855a4ca87eadb3e5ff284ed32ed307d9c34b;p=jalview.git diff --git a/help/html/calculations/consensus.html b/help/html/calculations/consensus.html index 12d832f..df8bdac 100644 --- a/help/html/calculations/consensus.html +++ b/help/html/calculations/consensus.html @@ -1,27 +1,29 @@ + -->
Alignment Consensus Annotation
The consensus displayed below the alignment is the percentage of the modal - residue per column. By default this calculation takes includes gaps in column. + residue per column. By default this calculation includes gaps in columns. You can choose to ignore gaps in the calculation by right clicking on the label "Consensus" to the left of the consensus bar chart.
If the modal value is shared by more than 1 residue, a "+" symbol @@ -35,8 +37,8 @@ clipboard.
Sequence logo
By clicking on the label you can also activate the sequence logo. It indicates the relative amount of residues per column which can be - estimated by it's size in the logo. The tooltip of a column gives the - exact numbers for all occuring residues. + estimated by its size in the logo. The tooltip of a column gives the + exact numbers for all occurring residues.