X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=help%2Fhtml%2FcolourSchemes%2Findex.html;h=51d0738325bbfdcf469f8cb095aff8165a3abe42;hb=d7785ddd65c330b780a9f6c73e228655b1ecc019;hp=fc5e0987d1be3fb62712824f9db43daeb6a4df6b;hpb=5a6d8d69732445af2189fc4bab7a09dbd77bb829;p=jalview.git diff --git a/help/html/colourSchemes/index.html b/help/html/colourSchemes/index.html index fc5e098..51d0738 100755 --- a/help/html/colourSchemes/index.html +++ b/help/html/colourSchemes/index.html @@ -1,4 +1,24 @@ +
Colour schemes
-Jalview allows the user to set a background colour for the whole -alignment view or for each group defined on regions within it.
-To change the background colour, simply select the colour from -the "Colour" menu.
-To change the colour of a group, right click on any residue -within a group and use the popup menu to define the group colour.
-At the top of the "Colour" menu the tick box -"Apply Background Colour to all groups". This is ticked by -default so that a chosen colour scheme will be applied to all existing -groups. If you wish to maintain the colour scheme for defined groups, -make sure you deselect this option before changing the background -colour.
-The "Colour→Colour Text..." entry -opens a dialog box to set a different text colour for light and dark -background, and the intensity threshold for transition between them.
-The default colour schemes are summarised in the table below: -
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+ Colour schemes +
+Jalview allows the user to set a colour scheme for the + whole alignment view or for each group defined on regions within it.
+To change the colour for a view, simply select a new colour scheme from + the "Colour" menu.
+To change the colour of a group, right click on any residue + within a group and use the popup menu to define the group colour.
+At the top of the "Colour" menu you'll see a tick box + "Apply Colour to all groups". This is ticked by + default so that a chosen colour scheme will be applied to all + existing groups. If you wish to maintain the colour scheme for + defined groups, make sure you deselect this option before selecting + a new scheme in the Colour menu.
++ The "Colour→Colour Text..." + entry opens a dialog box to set a different text colour for light + and dark background, and the intensity threshold for transition + between them. +
+The default colour schemes are summarised in the table below: +
+
+ Protein Colour Schemes +
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+ Nucleotide Colour Schemes +
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