X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=help%2Fhtml%2Ffeatures%2FbioJsonFormat.html;h=f8f87dce2755b68ec68f6d8f4ddc4db84d715f01;hb=5ae33a27065b5bf32541bda82c295c2e12e2f76a;hp=23a4aa2528d0fbf47143249416fdd94039ef51dc;hpb=b1cc8e6f8f1a20e6934b87305ceda18f828fdfd2;p=jalview.git diff --git a/help/html/features/bioJsonFormat.html b/help/html/features/bioJsonFormat.html index 23a4aa2..f8f87dc 100644 --- a/help/html/features/bioJsonFormat.html +++ b/help/html/features/bioJsonFormat.html @@ -20,33 +20,64 @@ * The Jalview Authors are detailed in the 'AUTHORS' file. -->
-+ BioJSON support in Jalview +
+BioJSON is a JavaScript Object Notation (JSON) specification + for the representation and exchange of multiple sequence alignment + data.
++ Jalview 2.9 includes support for reading and writing BioJSON v1.0 + data directly, or embedded in HTML documents. It can also generate + HTML pages which employ the BioJS MSA + viewer for interactive display of BioJSON data. +
++ Finding out more about BioJSON +
++ The BioJSON specification is published at http://jalview.github.io/biojson/. +
++ Import of BioJSON data from HTML pages +
+When importing embedded data in an HTML document, Jalview + searches for a hidden (usually) input or div element named + "seqData":
+
+ <div name="seqData" id="seqData" style="display: none;">#valid BioJSON data#</div>
+
+ OR
+
+ <input type="hidden" id="seqData" name="seqData" value='#valid BioJSON data#'/>
+
+ Jalview can also import BioJSON data directly.
-+ Jalview's Support for BioJSON v1.0 +
+BioJSON exports of an alignment view include the following + additional data:
+The following data are NOT currently preserved on export:
+