X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=help%2Fhtml%2Ffeatures%2Fchimera.html;h=dbaad73c115158bf61c6298cb07a2af26beda3aa;hb=4884e25f5b34c098cbfe5f207b2a3d938c9b82c4;hp=e86659755389cfda479bfbb734a1a60618d1e2fc;hpb=edd783fd9751100b5f7f54608cc942013d6075fb;p=jalview.git diff --git a/help/html/features/chimera.html b/help/html/features/chimera.html index e866597..dbaad73 100644 --- a/help/html/features/chimera.html +++ b/help/html/features/chimera.html @@ -24,7 +24,7 @@

The Chimera Viewer

Since Jalview 2.8.2, Chimera +

Since Jalview 2.8.2, Chimera (http://www.cgl.ucsf.edu/chimera/) has been integrated into Jalview for interactively viewing structures opened by entries in the "Structure" submenu in the sequence id pop-up menu (if you can't see this, then you need to -

Basic screen operations (see Chimera help for full details). +

Basic screen operations (see Chimera help +(http://www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/mouse.html) for full details). @@ -133,6 +134,8 @@ atoms in the displayed structures. For comprehensive details of Chimera's comman they are insertions (relative to the associated sequence in the alignment) and grey if they are N or C terminal flanks outside the region mapped to the alignment window's sequence. +
By Chain
+ Uses the Chimera 'rainbow chain' command to apply a different colour to each chain.
Charge & Cysteine
Highlights cysteines in yellow, anionic (Aspartic Acid or Glutamic Acid) residues in red, and cationic (Lysine or Arginine)

Action