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diff --git a/help/html/features/featuresFormat.html b/help/html/features/featuresFormat.html
index 171a3d0..4d13dcd 100755
--- a/help/html/features/featuresFormat.html
+++ b/help/html/features/featuresFormat.html
@@ -148,21 +148,22 @@
The parentheses are not needed if there is only one condition.
Combine multiple conditions with either and or or (but not a mixture).
Each condition is written as:
-
Label|Score|AttributeName condition [value]
- where condition is not case sensitive, and should be one of
+ Label or Score or AttributeName condition [value]
+ where either the label (description), (numeric) score, or (text or numeric) attribute is tested against the condition.
+
condition is not case sensitive, and should be one of
- - Contains - value should contain the given text (not case sensitive); example clinical_significance contains Pathogenic
- - NotContains - value should not contain the given text
- - Matches - value should match the given text (not case sensitive)
- - NotMatches - value should not match the given text (not case sensitive)
- - Present - specified attribute is present on the feature (no value required); example CSQ:SIFT present
- - NotPresent - specified attribute is not present on the feature (no value required)
+ - Contains - description (or attribute) should contain the given value (not case sensitive); example clinical_significance contains Pathogenic
+ - NotContains - description (or attribute) should not contain the given value
+ - Matches - description (or attribute) should match the given value (not case sensitive)
+ - NotMatches - description (or attribute) should not match the given value (not case sensitive)
+ - Present - attribute is present on the feature (no value required); example CSQ:SIFT present
+ - NotPresent - attribute is not present on the feature (no value required)
- EQ - feature score, or specified attribute, is equal to the (numeric) value
- NE, LT, LE, GT, GE - tests for not equal to / less than / less than or equal to / greater than / greater than or equal to the value
A non-numeric value always fails a numeric test.
If either attribute name, or value to compare, contains spaces, then enclose in single quotes:
'mutagenesis site' contains 'decreased affinity'
-
Tip: to see examples of valid syntax, first configure colours and filters in Jalview, then File | Export Features to Textbox in Jalview Format.
+
Tip: some examples of filter syntax are given below; or to see more, first configure colours and filters in Jalview, then File | Export Features to Textbox in Jalview Format.
Feature filters were added in Jalview 2.11