X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=help%2Fhtml%2Ffeatures%2Ffeatureschemes.html;h=37243d2ed58626adc2345d29d41799527a16bc3e;hb=4e60a6952c6b85e10335b3feb5fef6c81bba79a4;hp=e18e273bc6e63d17a8266460e4a4915b193850f3;hpb=6ab4ef1cc71ff9d28a21a139db69e4a8351a3fb5;p=jalview.git
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+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see
+ Sequence feature colour schemes +
++ Jalview can visualize annotation present on parts of a sequence by + overlaying colours according to the annotation present at each + position. It allows features to be colored either according to type, + or for a particular type, according to an individual feature's + associated label or score. The Feature + Settings dialog box controls the order and display of each + sequence annotation type, and also allows the colour scheme used for + the the feature to be changed via the 'Graduated Colour' + option in the sequence feature pop-up menu (obtained by + right-clicking on a sequence feature). +
+ +The Graduated Feature Colour dialog box has the following + controls: +
+ Icon styles for graduated feature styles
+
+ When a graduated colourscheme is applied to a feature, it is
+ indicated in the feature settings or amend feature dialog box by the
+ following types of icon:
+
Type of Colouring | +Icon | +
Graduated colour by Feature Score | +![]() |
+
Graduated colour thresholded (less than) by + feature Score | +![]() |
+
Graduated colour thresholded (greater than) by + feature Score | +![]() |
+
Colour by Feature Label (may also be + thresholded) | +![]() |
+
The + current threshold is given in the icon's tooltip. + | +