X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=help%2Fhtml%2Ffeatures%2Foverview.html;h=6401fdd735bc949e76b650df99c1c1884551d440;hb=706a727ff917a37a233ecbfd3b0c8afc494dda3d;hp=c5dc93db08c737b47120f6a040d7f796be76f7e9;hpb=a45774ee31d9f35d4eff46d54d7deab719afb092;p=jalview.git diff --git a/help/html/features/overview.html b/help/html/features/overview.html index c5dc93d..6401fdd 100755 --- a/help/html/features/overview.html +++ b/help/html/features/overview.html @@ -1,29 +1,56 @@ -
View→Overview window
-Select the overview window menu item to get a navigable image of the whole alignment. -
-The red box indicates the currently viewed region of the alignment, this - may be moved by clicking and dragging with the mouse.
- -+
+ View→Overview window +
+Select the overview window menu item to get a navigable image + of the whole alignment. By default, gaps are shown as dark grey, in + the overview (since 2.10.2b1).
+The red box indicates the currently viewed region of the + alignment, this may be moved by clicking and dragging with the + mouse.
+Click anywhere else in the overview to centre the view on that + position
+ ++ Hiding hidden regions in the overview +
+
+ Hidden sequences and columns are by default shown as dark-grey rows
+ and columns in the overview. Hidden regions can also be omitted
+ entirely (to make the Overview 'WYSIWIG') by Right-clicking
+ (or CMD-Clicking) to open the overview's popup menu.
+ The option to include/exclude hidden regions in the
+ overview was introduced in Jalview 2.10.2.
+
+
+ +
++ Previous to 2.10.2b1, gaps were white, and sequences shown as + dark grey unless coloured.