X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=help%2Fhtml%2Ffeatures%2Fsearch.html;h=3d608589608b4de33dde3838a6171c50ab5cfbb0;hb=57fa882fcd2d85ef524a027fe9883ce8c99649a3;hp=bffc1ff5a389b6ed2220416069d228c6b8a7d780;hpb=627cc304ce9dde4e1aa6bfd51f982e7c4613df9c;p=jalview.git

diff --git a/help/html/features/search.html b/help/html/features/search.html
index bffc1ff..3d60858 100755
--- a/help/html/features/search.html
+++ b/help/html/features/search.html
@@ -13,23 +13,27 @@ td {
 <p><strong>Search</strong></p>
 <p>The search box is displayed by pressing Control and F or
   selecting &quot;Find...&quot; from the &quot;Search&quot; menu.</p>
-<img src="search.gif">
-<p>&quot;Find next&quot; will find the next occurence of the specified
-  and adjust the alignment window view to show it, and &quot;Find
-  all&quot; highlights all matches for a pattern. The &quot;Create new
-  group&quot; is a quick way to highlight and group residues matching
-  the specified search pattern throughout the alignment.</p> 
+<img src="search.gif" width="339" height="110">
+<p>&quot;Find next&quot; will find the next occurence of the specified and adjust 
+  the alignment window view to show it, and &quot;Find all&quot; highlights all 
+  matches for a pattern. The &quot;New Feature&quot; is a quick way to highlight 
+  and group residues matching the specified search pattern throughout the alignment. 
 <ul>
-<li>The search uses regular expressions. (understands a mixture of
-  posix and perl style regex - see below for a summary)</li>
-<li>Gaps are ignored when matching the query to the sequences in the
-  alignment.</li>
-<li>The search is applied to both sequences and their IDs but the &quot;Find next&quot;
-  and &quot;Find all&quot; buttons only count the sequence matches.</li>
-  <li>If a region is selected, then search will <strong>only</strong>
-  be performed on that region. </li>
+  <li>The search uses regular expressions. (understands a mixture of posix and 
+    perl style regex - see below for a summary)</li>
+  <li>Gaps are ignored when matching the query to the sequences in the alignment.</li>
+  <li>The search is applied to both sequences and their IDs but the &quot;Find 
+    next&quot; and &quot;Find all&quot; buttons only count the sequence matches.</li>
+  <li>If a region is selected, then search will <strong>only</strong> be performed 
+    on that region. </li>
   <li>To quickly clear the current selection, press the &quot;Escape&quot; key.</li>
+  <li>Tick the &quot;Match Case&quot; box to perform a case sensitive search.</li>
 </ul>
+<p><strong>Creating Features from Search Results</strong></p>
+<p>
+  If &quot;New Feature&quot; is selected, the feature can be given a name from 
+  a popup input box. Use the &quot;Feature Settings&quot; under the &quot;View&quot; 
+  menu to change the visibility and colour of the new sequence feature.</p> 
 <p><strong>A quick Regular Expression Guide</strong></p>
 <p>A regular expression is not just a simple text query - although it
 can be used like one, the query is not parsed literally, but
@@ -84,12 +88,12 @@ below describes some of the regular expression syntax:<br></p>
   <tr>
     <td>{min,}</td>
     <td> Matches of the preceding element matched at least the
-    specified number of times.</td>
+    specified number of times</td>
   </tr>
   <tr>
     <td>{min,max} </td>
     <td>Matches if the preceding element matches min or at most max
-    number of times.</td>
+    number of times</td>
   </tr>
 </table>
 </body>