X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=help%2Fhtml%2Ffeatures%2FsplitView.html;h=e1c07c1c851197fe7cb2e36e2c268f1fd1a8ac33;hb=4e60a6952c6b85e10335b3feb5fef6c81bba79a4;hp=ed5bef32dbcb1a4a7956fedf4e3871d3cc770225;hpb=c17661b22323a66090ea91e04751aa17461b17c5;p=jalview.git
diff --git a/help/html/features/splitView.html b/help/html/features/splitView.html
index ed5bef3..e1c07c1 100644
--- a/help/html/features/splitView.html
+++ b/help/html/features/splitView.html
@@ -47,44 +47,46 @@
- Mouseover or scrolling of either alignment is followed by
the other (unless you turn off "View→Automatic Scrolling")
+ href="../menus/alwview.html">"View→Automatic
+ Scrolling")
- On selecting rows, columns or regions in one alignment, the
corresponding selection is made in the other
- Sequence ordering in one alignment (using the cursor, or "Calculate→Sort") is also applied to the other
+ href="../calculations/sorting.html">"Calculate→Sort")
+ is also applied to the other
- Editing (gap insertion / deletion) in the protein alignment
is reflected in the cDNA (but not vice versa)
- Any trees imported or created with "Calculate Tree" on one of the views allow both cDNA and
- Protein views to be grouped, coloured or sorted.
+ href="../calculations/tree.html">"Calculate Tree" on
+ one of the views allow both cDNA and Protein views to be grouped,
+ coloured or sorted.
- To allow for the different widths in cDNA and Protein
alignments, the "Format→Font"
menu option has an option 'Scale protein residues to codons'. This
option will make each protein residue the same width as a DNA
- codon (so the alignments 'line up' vertically)
-
+ codon (so the alignments 'line up' vertically).
+ - The 'Use same font for cDNA and peptide'
+ checkbox, when enabled, ensures that font or font-size changes in
+ either the cDNA or Protein alignment will also be mirrored. (Added
+ in 2.10.2)
- "View→Protein" (in the cDNA panel)
or "View→Nucleotide" (in the protein panel)
allows you to show or hide one or other of the linked alignment
panels.
- - Panel heights are adjusted dragging the divider between
+
- Panel heights are adjusted by dragging the divider between
them using the mouse
- - "View→New
+
- "View→New
View / Expand Views / Gather Views" behave as for a normal
alignment window, but always create new views as Split Frames
An alignment annotation row on the protein alignment shows the cDNA consensus for each peptide column.
This consensus may
- reveal variation in nucleotides coding for conserved protein
- residues.
+ href="../calculations/consensus.html">cDNA consensus for
+ each peptide column.
This consensus may reveal variation in
+ nucleotides coding for conserved protein residues.