X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=help%2Fhtml%2Findex.html;h=5bb9020dfed5584da7d26ddf9c40e54c9ef6a445;hb=3a5e7da51af0166273109f98bdf942e733105233;hp=43578fa180ada2e4f80ac6f60e6ce09f17f2210e;hpb=1ccaed89cec493136eb0f5ac22f2942dd8ce9bb0;p=jalview.git diff --git a/help/html/index.html b/help/html/index.html index 43578fa..5bb9020 100755 --- a/help/html/index.html +++ b/help/html/index.html @@ -1,20 +1,104 @@ - -
Jalview - Documentation
--JalView (1999) is a fast Java multiple alignment editor and analysis tool. It -features many of the functions of AMAS, -for the analysis of sub-families and the prediction of functional sites, but is -fully interactive. - -
If you use JalView in your work, please cite the bioinformatics paper:
-Clamp, M., Cuff, J., Searle, S. M. and Barton, G. J. (2004), "The Jalview - Java Alignment Editor", Bioinformatics, 12, 426-7.
-+ Welcome to Jalview's built in documentation. +
+Here are some good places to start:
++ For more information, you might also want to take a look at the + documentation section of the Jalview website (http://www.jalview.org/about/documentation). +
++ If you are using the Jalview Desktop application and are looking for + something specific, then try the search box (next to the print + icon). If you're already viewing this in your web browser, then + google the online version of these pages. If you don't find what you + are looking for, or want to report a bug or make a feature request, + then get in contact over at http://www.jalview.org/community +
+ +
+ Citing Jalview
If you use Jalview in your
+ work, please cite the Jalview 2 paper in Bioinformatics:
+
+ Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M., Barton,
+ G.J (2009),
"Jalview version 2: A Multiple Sequence
+ Alignment and Analysis Workbench,"
Bioinformatics
+ 25 (9) 1189-1191 doi: 10.1093/bioinformatics/btp033
+
+ The Jalview Authors
The following people have
+ contributed to Jalview's development:
+