X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=help%2Fhtml%2Fio%2Ffileformats.html;h=7bfc43556fcb0a6628b7fc47ba1849521b6fff36;hb=b0c310ec55943ba114a00ee581f6430d8dc945c7;hp=c62c077bc2e050af0e5d7112b258b812b6f5095d;hpb=c53aeee9a688f68d64106a968876e542f701fbc6;p=jalview.git

diff --git a/help/html/io/fileformats.html b/help/html/io/fileformats.html
index c62c077..7bfc435 100755
--- a/help/html/io/fileformats.html
+++ b/help/html/io/fileformats.html
@@ -1,21 +1,24 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
--->
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
 <head>
 <title>Alignment Fileformats</title>
 <style type="text/css">
@@ -40,7 +43,7 @@ jalview tries to detect some text or formatting unique to one of the formats:
 <tr>
 <td width="17%">FASTA</td>
 <td width="60%">&gt;SequenceName<br>
-THISISASEQENCE<br></td>
+THISISASEQUENCE<br></td>
 <td width="23%">.fa, .fasta</td>
 </tr><tr><td width="17%">MSF</td>
 <td width="60%">!! AA_MULTIPLE_ALIGNMENT 1.0<br>
@@ -61,8 +64,13 @@ THISISASEQENCE<br></td>
 &gt;Seq2</td>
 <td width="23%">.blc</td>
 </tr><tr><td width="17%">PFAM</td>
-<td width="60%">SequenceName THISISASEQENCE</td>
+<td width="60%">SequenceName THISISASEQUENCE</td>
 <td width="23%">.pfam</td>
+</tr><tr>
+<td width="17%">Stockholm</td>
+<td width="60%"># STOCKHOLM VersionNumber<br>
+<em>...</em><br>//</td>
+<td width="23%">.stk, .sto</td>
 </tr>
 </table>
 <p>The file extensions are used to associate jalview alignment icons
