X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=help%2Fhtml%2Fmenus%2Falwannotations.html;h=546a94a943bcaeb086b5c689191479431b28b85c;hb=bb105fcca41253815982584f4c8f6fae1f8e10a3;hp=5655a5ac742b2ebced4882b8be4c7cb308347fa6;hpb=ac5cc638b08386985f91503c81b27263230046e3;p=jalview.git

diff --git a/help/html/menus/alwannotations.html b/help/html/menus/alwannotations.html
index 5655a5a..546a94a 100755
--- a/help/html/menus/alwannotations.html
+++ b/help/html/menus/alwannotations.html
@@ -20,14 +20,18 @@
         up the menu.</em> </li>
       <li><strong>Show All Hidden Rows</strong><br>
         <em>Shows all hidden annotation rows.</em> </li>
-      <li><strong>Show Values in Text Box</strong><br>
-        <em>Opens a text box with a list of comma-separated values corresponding 
-        to the annotation (numerical or otherwise) at each position in the row. 
-        This is useful to export alignment quality measurements for further analysis.</em> 
-      </li>
+      <li><strong>Export Annotation</strong><br>
+        <em>Annotations can be saved to file or output to a text window in the 
+        Jalview annotations format. </em> </li>
       <li><strong>Ignore Gaps in Consensus</strong><br>
-        If this checkbox is selected, all conensus calculations performed in the 
-        current Alignment window will not include gaps in the consensus calculation.</li>
+        If this checkbox is selected, all consensus calculations performed in 
+        the current Alignment window will be done without counting gaps as a consensus 
+        character.</li>
+      <li><strong>Copy Consensus Sequence</strong><br>
+        Copies the consensus sequence to the clipboard in Fasta format, to allow 
+        the consensus sequence to be added to an alignment. Note the copied sequence 
+        is not accessible to other programs if Jalview is running as an applet 
+        in a web page.</li>
     </ul>
   </li>
   <li><strong>Annotation Popup Menu<br>