X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=help%2Fhtml%2FwhatsNew.html;h=344c322233d893da5d0fd96edbcb175d510b5380;hb=9d62842028ff8c2f943ddbf82c28f2c31b878620;hp=8c28564b88fd535421d6938c6ca2bad0311930d2;hpb=7cdae57d68efc9bae8e64511bd7d41eda7d6c33d;p=jalview.git diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html index 8c28564..344c322 100755 --- a/help/html/whatsNew.html +++ b/help/html/whatsNew.html @@ -1,34 +1,54 @@ - -
What's new ?
-Jalview Version 2.08
-Editing can be locked to the selection area. - Any edits made within the locked area do not affect the rest of the alignment.
-Keyboard editing - press F2 to toggle cursor mode On / Off. For a full list - of keyboard controls, look here.
-Create sequence features from searches. - Previously results from searches were added as alignment positions, which was - wrong. Now the search results are saved as sequence features and their visibility - and colour can be modified using the Sequence - Feature Settings window.
-Precalculated annotations can be loaded onto alignments. The Annotation - File format is a tab delimited set of values.
-Features file allows grouping of - features. The Sequence Feature Settings - window then makes it very easy to set the visibility of groups of features. -
-Annotation Colouring - scheme added. A new colour scheme which colours columns on a per-column value.
-Smooth fonts off by default - faster rendering. Toggle on / off from the View - menu, or can be set in Preferences.
- Choose to toggle Autocalculate Consensus On/Off from the Calculate menu.
-
Issues Resolved
-Drag & Drop fixed on Linux
- Jalview Archive file faster to load/save, sequence descriptions saved.
-
See the Release History page for details of all - new features and resolved issues.
- - + +What's new ?
+ +Jalview Version 2.2
+Multiple views with different styles, colours, hidden regions for one alignment +
+Easily add, amend and delete sequence features +
+"Reload" alignment from File or URL to revert to original +
+"Save" to current filename or "Save As" to new filename +
+Set different text colour for dark or light background +
+Right align sequence ids +
+Set colour of lower case residues in a user defined colour scheme +
+Menu Rearrangements: New Format for alignment layout and Select for region selection. +
+Menu item accelerator keys added +
+Control-V pastes sequences to active window, Control-Shift-V pastes to a new window. +
+Raise/Minimise alignment and all associated windows from desktop window's window menu +
+Select and colour whole branches of a tree
+'New Window' button on the 'Output to Text box' alignment output +option to open a new alignment window after editing.
+Issues Resolved
+ ++Optimisations for large alignments: faster multithreaded calculations and Undo/Redo system. +
+Remove empty columns - if empty columns exist at the end of the +alignment bug fixed. +
+DAS feature fetching slowed down, doesn't overload DAS servers +
+DAS feature fetching can be cancelled +
+Correct display of > and < symbols for feature descriptions without explicit <html> tags. +
+Zoom working in PCA viewer +
+Sequence Descriptions retained after running a web service +
++
See the Release History page for details of all + new features and resolved issues.
+ +