X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=help%2Fhtml%2FwhatsNew.html;h=ae45aaecd1632a30c1bbfd5e450634d194d2e162;hb=91e9ddff22dd9406d8784b8a91f03d7b94b4a180;hp=cf96d474e209855f2d8c501f9bb9c81286f6b97b;hpb=a45774ee31d9f35d4eff46d54d7deab719afb092;p=jalview.git

diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html
index cf96d47..ae45aae 100755
--- a/help/html/whatsNew.html
+++ b/help/html/whatsNew.html
@@ -1,21 +1,24 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
--->
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
 <head>
 <title>What's new ?</title>
 </head>
@@ -24,80 +27,14 @@
 		<strong>What's new ?</strong>
 	</p>
 	<p>
-		The Jalview 2.7 release features new web services, and important
-		improvements to the way in which Jalview handles alignments and
-		associated PDB structures, as well as numerous minor improvements and
-		bug fixes. Version 2.7 of the JalviewLite applet also features a
-		significantly enhanced Javascript API enabling it to be more easily
-		integrated with javascript based web applications. <br /> For full
-		details see the <a href="releases.html#Jalview2.7">Jalview 2.7
-			release history</a>.
-	</p>
-	<p>
-		<strong>Highlights in Jalview Desktop Version 2.7</strong>
+		Jalview 2.8.2 is the first release produced by our new core
+		development team.<br /> It incorporates many minor improvements and
+		bug-fixes, and also includes new features for working with 3D
+		structure data, shading alignments by secondary structure and
+		generation of alignment figures as Scalable Vector Graphics. <br />As
+		ever, the highlights are detailed below, and the full list is given in
+		the <a href="releases.html#Jalview2.8.2">Jalview 2.8.2 Release
+			Notes</a>.
 	</p>
-	<ul>
-		<li>New <a href="features/viewingpdbs.html">structure viewer
-				options</a>:
-			<ul>
-				<li>Colour and superimpose 3D structures of complexes and
-					multi-domain chains using several different alignments</li>
-				<li>Drag and drop to associate PDB files with sequences that
-					have the same name</li>
-				<li>Open and superimpose all associated structures for the
-					current selection</li>
-			</ul>
-		<li>New web services for <a href="webServices/shmr.html">alignment
-				analysis</a></li>
-		<li>Improved graphical user interface for <a
-			href="http://www.compbio.dundee.ac.uk/jabaws">JABAWS</a>services.
-		</li>
-		<li>Sort associated alignment views option in tree viewer</li>
-		<li>Default colours for <a
-			href="colourSchemes/annotationColouring.html">shading alignment
-				by quantitative annotation</a>.
-		</li>
-		<li><a href="webServices/newsreader.html">Jalview Desktop RSS
-				reader</a> - following important updates at <a
-			href="http://www.jalview.org/feeds/desktop/rss">http://www.jalview.org/feeds/desktop/rss</a>
-	</ul>
-
-	<p>
-		<strong>Issues Resolved (a select list - see the <a
-			href="releases.html#Jalview2.7">release history</a> for full details)
-		</strong>
-	</p>
-	<p>
-		<strong>Issues in the Jalview Desktop</strong>
-	<ul>
-		<li>Problems viewing associated structures for sequences
-			retrieved from UNIPROT</li>
-		<li>Problems viewing Jalview projects from older versions in
-			version 2.6</li>
-		<li>Preservation of hidden annotation rows and tree bootstrap
-			values in projects</li>
-		<li>Newly added JABAWS servers not always visible in web services
-			menu</li>
-	</ul>
-	<strong>Issues specific to the JalviewLite Applet</strong>
-	<ul>
-		<li>Layout problems when lots of annotation rows are displayed</li>
-		<li>&lt;= shown as = in annotation row tooltip</li>
-		<li>export features raises exception when no features exist</li>
-		<li>relative URLs not handled properly when used in parameters
-			and annotation files</li>
-	</ul>
-	<strong>Issues affecting both applet and application</strong>
-	<ul>
-		<li>sequence numbering not preserved in MSF alignment output</li>
-		<li>sequence associated secondary structure not correctly parsed
-			in interleaved stockholm</li>
-		<li>sequences containing lowercase letters are not properly
-			associated with their pdb files</li>
-		<li>Jalview PDB file reader does not extract sequence from deoxy
-			nucleotide chains correctly</li>
-		<li>Sequence length given in alignment properties window is off
-			by 1</li>
-	</ul>
 </body>
 </html>
