X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=src%2FMCview%2FAtom.java;h=9cbcebb004f3b992cd829f2a5594528e7aca2adf;hb=4f9d1e48b9d0231de697b36971311e4908490762;hp=96faa5abb801d199ae873ec0829fe342742d98c2;hpb=ab43013b7e357b84b4abade0dba949668dfb2a0e;p=jalview.git diff --git a/src/MCview/Atom.java b/src/MCview/Atom.java index 96faa5a..9cbcebb 100755 --- a/src/MCview/Atom.java +++ b/src/MCview/Atom.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1) - * Copyright (C) 2014 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -20,7 +20,7 @@ */ package MCview; -import java.awt.*; +import java.awt.Color; public class Atom { @@ -77,16 +77,16 @@ public class Atom chain = str.substring(21, 22); resNumber = Integer.parseInt(str.substring(22, 26).trim()); - resNumIns = str.substring(22, 27); + resNumIns = str.substring(22, 27).trim(); insCode = str.substring(26, 27).charAt(0); - this.x = (float) (new Float(str.substring(30, 38).trim()).floatValue()); - this.y = (float) (new Float(str.substring(38, 46).trim()).floatValue()); - this.z = (float) (new Float(str.substring(47, 55).trim()).floatValue()); + this.x = (new Float(str.substring(30, 38).trim()).floatValue()); + this.y = (new Float(str.substring(38, 46).trim()).floatValue()); + this.z = (new Float(str.substring(47, 55).trim()).floatValue()); // optional entries - see JAL-730 String tm = str.substring(54, 60).trim(); if (tm.length() > 0) { - occupancy = (float) (new Float(tm)).floatValue(); + occupancy = (new Float(tm)).floatValue(); } else { @@ -96,7 +96,7 @@ public class Atom tm = str.substring(60, 66).trim(); if (tm.length() > 0) { - tfactor = (float) (new Float(tm).floatValue()); + tfactor = (new Float(tm).floatValue()); } else {