X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=src%2FMCview%2FBond.java;h=371ccd5280ae124657d3748b03d883d8d8e8687a;hb=8908d72b2ec49d864ea1d0de19a44fefd2466a4f;hp=fdfb3d01fb6f7ebac7f056d4cfaae1ffd3d73d39;hpb=b2f9a8d7bce642ff4011bc6d49e02bb0569fbb11;p=jalview.git
diff --git a/src/MCview/Bond.java b/src/MCview/Bond.java
index fdfb3d0..371ccd5 100755
--- a/src/MCview/Bond.java
+++ b/src/MCview/Bond.java
@@ -1,24 +1,26 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package MCview;
-import java.awt.*;
+import java.awt.Color;
public class Bond
{
@@ -34,10 +36,10 @@ public class Bond
public Atom at2;
- public Bond(float[] start, float[] end, Atom at1, Atom at2)
+ public Bond(Atom at1, Atom at2)
{
- this.start = start;
- this.end = end;
+ this.start = new float[] { at1.x, at1.y, at1.z };
+ this.end = new float[] { at2.x, at2.y, at2.z };
this.startCol = at1.color;
this.endCol = at2.color;
this.at1 = at1;
@@ -68,13 +70,13 @@ public class Bond
public void translate(float x, float y, float z)
{
- start[0] = (start[0] + x);
- end[0] = (end[0] + x);
+ start[0] = start[0] + x;
+ end[0] = end[0] + x;
- start[1] = (start[1] + y);
- end[1] = (end[1] + y);
+ start[1] = start[1] + y;
+ end[1] = end[1] + y;
- start[2] = (start[2] + z);
- end[2] = (end[2] + z);
+ start[2] = start[2] + z;
+ end[2] = end[2] + z;
}
}