X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=src%2FMCview%2FResidue.java;h=edef5f1bcfe22cb7826fed42dce87bbbc873a5e8;hb=refs%2Fheads%2Ftask%2FJAL-2562_SequenceI.findPosition;hp=4bd66af0d8436ee8204361a84e45134e40e2bcc5;hpb=fbf0a6e1eb4869dc676334a30c9e40b60a7659ac;p=jalview.git
diff --git a/src/MCview/Residue.java b/src/MCview/Residue.java
index 4bd66af..edef5f1 100755
--- a/src/MCview/Residue.java
+++ b/src/MCview/Residue.java
@@ -1,48 +1,57 @@
-/*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
-*/
-package MCview;
-
-import java.util.*;
-
-
-public class Residue {
- Vector atoms = new Vector();
- int number;
- int count;
- int seqnumber;
-
- public Residue(Vector atoms, int number, int count) {
- this.atoms = atoms;
- this.number = number;
- this.count = count;
- }
-
- public Atom findAtom(String name)
- {
- for (int i = 0; i < atoms.size(); i++)
- {
- if (((Atom) atoms.elementAt(i)).name.equals(name))
- {
- return (Atom) atoms.elementAt(i);
- }
- }
-
- return null;
- }
-}
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package MCview;
+
+import java.util.Vector;
+
+public class Residue
+{
+ Vector atoms;
+
+ int number;
+
+ int count;
+
+ public Residue(Vector resAtoms, int number, int count)
+ {
+ this.atoms = resAtoms;
+ this.number = number;
+ this.count = count;
+ }
+
+ public Atom findAtom(String name)
+ {
+ for (Atom atom : atoms)
+ {
+ if (atom.name.equals(name))
+ {
+ return atom;
+ }
+ }
+
+ return null;
+ }
+
+ public Vector getAtoms()
+ {
+ return this.atoms;
+ }
+}