X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=src%2Fext%2Fedu%2Fucsf%2Frbvi%2Fstrucviz2%2FChimeraManager.java;fp=src%2Fext%2Fedu%2Fucsf%2Frbvi%2Fstrucviz2%2FChimeraManager.java;h=c0c7c467cfb728c3535864d2151c78465264f2d9;hb=8c7fd90d480e2671e0fa251ada3c89fa1d18862a;hp=4201f439392cb0340fda9b5750411ad5a128f117;hpb=ea7b9666447dea727e9d607de3694cfe27bc811e;p=jalview.git

diff --git a/src/ext/edu/ucsf/rbvi/strucviz2/ChimeraManager.java b/src/ext/edu/ucsf/rbvi/strucviz2/ChimeraManager.java
index 4201f43..c0c7c46 100644
--- a/src/ext/edu/ucsf/rbvi/strucviz2/ChimeraManager.java
+++ b/src/ext/edu/ucsf/rbvi/strucviz2/ChimeraManager.java
@@ -199,8 +199,9 @@ public class ChimeraManager
       return null;
     }
 
-    List<ChimeraModel> newModelList = getModelList();
-    for (ChimeraModel newModel : newModelList)
+    // patch for Jalview - set model name in Chimera
+    // TODO: find a variant that works for sub-models
+    for (ChimeraModel newModel : getModelList())
     {
       if (!modelList.contains(newModel))
       {
@@ -209,15 +210,12 @@ public class ChimeraManager
                 "setattr M name " + modelName + " #"
                         + newModel.getModelNumber(), false);
         modelList.add(newModel);
-
       }
     }
 
     // assign color and residues to open models
     for (ChimeraModel chimeraModel : modelList)
     {
-      // // patch for Jalview - set model name in Chimera
-      // // TODO: find a variant that works for sub-models
       // get model color
       Color modelColor = getModelColor(chimeraModel);
       if (modelColor != null)
@@ -731,7 +729,7 @@ public class ChimeraManager
    */
   public List<String> sendChimeraCommand(String command, boolean reply)
   {
-    // System.out.println("chimeradebug>> " + command);
+   // System.out.println("chimeradebug>> " + command);
     if (!isChimeraLaunched() || command == null
             || "".equals(command.trim()))
     {