X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=src%2Fjalview%2Fanalysis%2FAlignSeq.java;h=cd548b32b1da9dedbc8408b9b1efa53b27022db1;hb=373a0f23b37fdd3c40d3ebb4a3c9120f5773bb45;hp=ab0366857865a798438a030ef7bbf9a1d0653c22;hpb=10ff37d2cb03f342ddbed679951d3e2fef0a404b;p=jalview.git

diff --git a/src/jalview/analysis/AlignSeq.java b/src/jalview/analysis/AlignSeq.java
index ab03668..cd548b3 100755
--- a/src/jalview/analysis/AlignSeq.java
+++ b/src/jalview/analysis/AlignSeq.java
@@ -1159,7 +1159,8 @@ public class AlignSeq
           }
           if (sq.getAnnotation() != null && sq.getAnnotation().length > 0)
           {
-            annotations.addAll(inspos, Arrays.asList(sq.getAnnotation()));
+            annotations.addAll(inspos == -1 ? annotations.size() : inspos,
+                    Arrays.asList(sq.getAnnotation()));
           }
         }
       }