X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=src%2Fjalview%2Fanalysis%2FSeqsetUtils.java;h=564e3f13bcc69cc3edeb28a54947e5f5482b56bf;hb=b69f9ee5ab59f619524d22ca2b22915f5006c26e;hp=11a31be6c6f0abc7ed1d773656b150a93084f742;hpb=39ef69a1e99aac47b3737f57605f68029ec4d897;p=jalview.git

diff --git a/src/jalview/analysis/SeqsetUtils.java b/src/jalview/analysis/SeqsetUtils.java
index 11a31be..564e3f1 100755
--- a/src/jalview/analysis/SeqsetUtils.java
+++ b/src/jalview/analysis/SeqsetUtils.java
@@ -51,8 +51,8 @@ public class SeqsetUtils
     sqinfo.put("End", new Integer(seq.getEnd()));
     sqinfo.put("SeqFeatures", (seq.getSequenceFeatures() !=null) ? seq.getSequenceFeatures() : new Vector());
     sqinfo.put("PdbId",
-               (seq.getPDBId() != null) ? seq.getPDBId() : new String(""));
-
+               (seq.getPDBId() != null) ? seq.getPDBId() : new Vector());
+    sqinfo.put("datasetSequence", (seq.getDatasetSequence() !=null) ? seq.getDatasetSequence() : new Sequence("THISISAPLACEHOLDER",""));
     return sqinfo;
   }
 
@@ -71,8 +71,8 @@ public class SeqsetUtils
     Integer end = (Integer) sqinfo.get("End");
     java.util.Vector sfeatures = (java.util.Vector) sqinfo.get(
         "SeqFeatures");
-    String pdbid = (String) sqinfo.get("PdbId");
-
+    Vector pdbid = (Vector) sqinfo.get("PdbId");
+    Sequence seqds = (Sequence) sqinfo.get("datasetSequence");
     if (oldname == null)
     {
       namePresent = false;
@@ -97,6 +97,9 @@ public class SeqsetUtils
     {
       sq.setSequenceFeatures(sfeatures);
     }
+    if ((seqds!=null) && !(seqds.getName().equals("THISISAPLACEHOLDER") && seqds.getLength()==0)) {
+      sq.setDatasetSequence(seqds);
+    }
 
     return namePresent;
   }