X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=src%2Fjalview%2Fanalysis%2FSeqsetUtils.java;h=5c6b99b4f11bcb01b0ffee92ac729a3a38b4a21e;hb=a38b2227929a7eb5dee0925cb4c57d43d383718f;hp=a0d0f0030b3540f26ec603b86340fb4563482a09;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git
diff --git a/src/jalview/analysis/SeqsetUtils.java b/src/jalview/analysis/SeqsetUtils.java
index a0d0f00..5c6b99b 100755
--- a/src/jalview/analysis/SeqsetUtils.java
+++ b/src/jalview/analysis/SeqsetUtils.java
@@ -1,19 +1,22 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see
- * Title: - *
- * - *- * Description: - *
- * - *- * Copyright: Copyright (c) 2004 - *
- * - *- * Company: Dundee University - *
- * - * @author not attributable - * @version 1.0 - */ public class SeqsetUtils { @@ -74,8 +57,9 @@ public class SeqsetUtils sqinfo.put("SeqFeatures", sfeat); sqinfo.put("PdbId", (seq.getPDBId() != null) ? seq.getPDBId() : new Vector()); - sqinfo.put("datasetSequence", (seq.getDatasetSequence() != null) ? seq - .getDatasetSequence() : new Sequence("THISISAPLACEHOLDER", "")); + sqinfo.put("datasetSequence", + (seq.getDatasetSequence() != null) ? seq.getDatasetSequence() + : new Sequence("THISISAPLACEHOLDER", "")); return sqinfo; } @@ -287,8 +271,8 @@ public class SeqsetUtils for (int i = 0, j = sequences.length; i < j; i++) { String tempseq = jalview.analysis.AlignSeq.extractGaps( - jalview.util.Comparison.GapChars, sequences[i] - .getSequenceAsString()); + jalview.util.Comparison.GapChars, + sequences[i].getSequenceAsString()); if (tempseq.length() == 0) {