X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=src%2Fjalview%2Fapi%2FFeatureColourI.java;h=98a37c4e93698cc7a846aae059506256ae98869d;hb=266d94fa55ce42491be2552bfcf2e2b0a7901c04;hp=078027139a1d900157d0ce6452094121fe223ceb;hpb=9e926ac4305fd9dff38b6e079e55b4f50664d544;p=jalview.git diff --git a/src/jalview/api/FeatureColourI.java b/src/jalview/api/FeatureColourI.java index 0780271..98a37c4 100644 --- a/src/jalview/api/FeatureColourI.java +++ b/src/jalview/api/FeatureColourI.java @@ -72,7 +72,8 @@ public interface FeatureColourI boolean isSimpleColour(); /** - * Answers true if the feature is coloured by label (description) + * Answers true if the feature is coloured by label (description) or by text + * value of an attribute * * @return */ @@ -191,4 +192,24 @@ public interface FeatureColourI * @return */ void setAttributeName(String... name); + + /** + * Answers true if colour has a threshold set, and the feature score (or other + * attribute selected for colouring) is outwith the threshold. + *
+ * Answers false if not a graduated colour, or no threshold is set, or value + * is not outwith the threshold, or value is null or non-numeric. + * + * @param sf + * @return + */ + boolean isOutwithThreshold(SequenceFeature sf); + + /** + * Answers a human-readable text description of the colour, suitable for display + * as a tooltip, possibly internationalised for the user's locale. + * + * @return + */ + String getDescription(); }