X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=src%2Fjalview%2Fapi%2FFeatureRenderer.java;h=79911d9cd8063ed10ec4cf19f91df8879b02895e;hb=8647c805617f33b905c4f72ebe30aab3c21b56f4;hp=df8fe84bda479c097a73529ef124e3782335e820;hpb=1e1f9a1e1983144126974c77005dcab524051ae7;p=jalview.git
diff --git a/src/jalview/api/FeatureRenderer.java b/src/jalview/api/FeatureRenderer.java
index df8fe84..79911d9 100644
--- a/src/jalview/api/FeatureRenderer.java
+++ b/src/jalview/api/FeatureRenderer.java
@@ -1,16 +1,38 @@
-/**
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
*
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.api;
+import jalview.datamodel.SequenceFeature;
import jalview.datamodel.SequenceI;
import java.awt.Color;
+import java.util.Hashtable;
+import java.util.List;
+import java.util.Map;
/**
* Abstract feature renderer interface
+ *
* @author JimP
- *
+ *
*/
public interface FeatureRenderer
{
@@ -19,4 +41,38 @@ public interface FeatureRenderer
void featuresAdded();
+ Object getFeatureStyle(String ft);
+
+ void setColour(String ft, Object ggc);
+
+ AlignViewportI getViewport();
+
+ FeaturesDisplayedI getFeaturesDisplayed();
+
+ Map getFeatureColours();
+
+ void findAllFeatures(boolean newMadeVisible);
+
+ Map getDisplayedFeatureCols();
+
+ List getFeatureGroups();
+
+ List getGroups(boolean visible);
+
+ void setGroupVisibility(List toset, boolean visible);
+
+ void setGroupVisibility(String group, boolean visible);
+
+ List findFeaturesAtRes(SequenceI sequence, int res);
+
+ boolean isTransparencyAvailable();
+
+ String[] getDisplayedFeatureTypes();
+
+ String[] getDisplayedFeatureGroups();
+
+ void setAllVisible(List featureTypes);
+
+ void setVisible(String featureType);
+
}