X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=src%2Fjalview%2Fappletgui%2FAlignFrame.java;h=85fb03c112dfc72bc1baf02a3abdcb8c654b0181;hb=8d0d4cb4f21a2f15d61b90b0eb764041c664c81d;hp=63f27451c642dfce97a7d64443e893b66f29af10;hpb=17617d568de6620954c0616344f532bcaa4b57cd;p=jalview.git

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 63f2745..85fb03c 100644
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -1445,15 +1445,14 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
     FeaturesFile formatter = new FeaturesFile();
     if (format.equalsIgnoreCase("Jalview"))
     {
-      features = formatter.printJalviewFormat(viewport.getAlignment()
-              .getSequencesArray(), getDisplayedFeatureCols(),
-              getDisplayedFeatureGroups(), true);
+      features = formatter.printJalviewFormat(
+              viewport.getAlignment().getSequencesArray(),
+              alignPanel.getFeatureRenderer(), true);
     }
     else
     {
       features = formatter.printGffFormat(viewport.getAlignment()
-              .getSequencesArray(), getDisplayedFeatureCols(),
-              getDisplayedFeatureGroups(), true);
+              .getSequencesArray(), alignPanel.getFeatureRenderer(), true);
     }
 
     if (displayTextbox)