X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=src%2Fjalview%2Fdatamodel%2FSearchResults.java;h=bd1a3751759825d628f05e0f302b7a03a4b5f94c;hb=dfa04e77181fccfa6229ffef1591fc9c622d9b39;hp=240052464ef1842fa1686be892d3af4cbe89f8b7;hpb=2de8acfae59aced665e4c37ad0f7dcc2ed68818e;p=jalview.git
diff --git a/src/jalview/datamodel/SearchResults.java b/src/jalview/datamodel/SearchResults.java
index 2400524..bd1a375 100755
--- a/src/jalview/datamodel/SearchResults.java
+++ b/src/jalview/datamodel/SearchResults.java
@@ -1,20 +1,20 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
- * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Copyright (C) 2014 The Jalview Authors
*
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
*
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.datamodel;
@@ -29,11 +29,11 @@ public class SearchResults
* alignment
*
* @param seq
- * Sequence
+ * Sequence
* @param start
- * int
+ * int
* @param end
- * int
+ * int
*/
public void addResult(SequenceI seq, int start, int end)
{
@@ -57,29 +57,32 @@ public class SearchResults
matches = tmp;
}
+
/**
* Quickly check if the given sequence is referred to in the search results
- * @param sequence (specific alignment sequence or a dataset sequence)
+ *
+ * @param sequence
+ * (specific alignment sequence or a dataset sequence)
* @return true if the results involve sequence
*/
public boolean involvesSequence(SequenceI sequence)
{
- if (matches==null || matches.length==0)
+ if (matches == null || matches.length == 0)
{
return false;
}
SequenceI ds = sequence.getDatasetSequence();
- for (int m=0; m"+end +" or "
+ // + matchEnd+"<"+start);
+ }
}
}
return result;