X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=src%2Fjalview%2Fdatamodel%2FSecondaryStructureAnnotation.java;h=476eb19f9cf7667b8234cdb2350a7d36cc0ee6e6;hb=refs%2Fheads%2Ffeatures%2FJAL-2465_No-mapping_Jmol-structures-loaded-via-url;hp=5c3eae92fe8bc695ba6ae2bd6b10d3ab1d769129;hpb=a7f8fa9c06d82efbbdbc6a0bf1054bb21610b353;p=jalview.git
diff --git a/src/jalview/datamodel/SecondaryStructureAnnotation.java b/src/jalview/datamodel/SecondaryStructureAnnotation.java
index 5c3eae9..476eb19 100644
--- a/src/jalview/datamodel/SecondaryStructureAnnotation.java
+++ b/src/jalview/datamodel/SecondaryStructureAnnotation.java
@@ -1,31 +1,52 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.datamodel;
import fr.orsay.lri.varna.models.rna.RNA;
public class SecondaryStructureAnnotation extends AlignmentAnnotation
{
-
- private static RNA _rna = null;
- public SecondaryStructureAnnotation (RNA rna)
- {
- super("Secondary Structure", "Un truc trop cool",getAnnotation(rna));
-
-
- _rna = rna;
- }
-
- public RNA getRNA()
- {
- return _rna;
- }
- public static Annotation[] getAnnotation(RNA rna)
- {
- Annotation[] ann = new Annotation[rna.getSize()];
- for(int i=0;i