X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=src%2Fjalview%2Fdatamodel%2FSequenceCollectionI.java;h=96c7af8c1c728925d7abd11056b72a61cff44d27;hb=17e77c3f2949a0729322b4a8d907f3f34b6a9914;hp=7777dce8a7ba5939c05d0624f92af5750088c27b;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git diff --git a/src/jalview/datamodel/SequenceCollectionI.java b/src/jalview/datamodel/SequenceCollectionI.java index 7777dce..96c7af8 100644 --- a/src/jalview/datamodel/SequenceCollectionI.java +++ b/src/jalview/datamodel/SequenceCollectionI.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) - * Copyright (C) $$Year-Rel$$ The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9) + * Copyright (C) 2015 The Jalview Authors * * This file is part of Jalview. * @@ -29,20 +29,26 @@ public interface SequenceCollectionI List getSequences( Map hiddenReps); + int getWidth(); + /** * * @return true if getSeqrep doesn't return null */ boolean hasSeqrep(); + /** * get the reference or representative sequence within this collection + * * @return null or the current reference sequence */ SequenceI getSeqrep(); + /** - * set the reference or representative sequence for this collection. - * Reference is assumed to be present within the collection. + * set the reference or representative sequence for this collection. Reference + * is assumed to be present within the collection. + * * @return */ void setSeqrep(SequenceI refseq);