X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=src%2Fjalview%2Fgui%2FFeatureRenderer.java;h=55c4323e46597557dc6f5f8e4697a19e926f47cf;hb=80e3c4b6e17a6262ccbc193b9824ea3700a86f87;hp=2f12eef1a607cf0a455a59d156d5ebb77fd1287a;hpb=268dfe33ea14bbcdfb0671a1ec8acc5e9c423426;p=jalview.git

diff --git a/src/jalview/gui/FeatureRenderer.java b/src/jalview/gui/FeatureRenderer.java
index 2f12eef..55c4323 100644
--- a/src/jalview/gui/FeatureRenderer.java
+++ b/src/jalview/gui/FeatureRenderer.java
@@ -199,7 +199,7 @@ public class FeatureRenderer extends
           if (col != null)
           {
             fcol = new FeatureColour(col);
-            updateColourButton(mainPanel, colour, new FeatureColour(col));
+            updateColourButton(mainPanel, colour, fcol);
           }
         }
         else
@@ -357,7 +357,7 @@ public class FeatureRenderer extends
     end.setValue(new Integer(firstFeature.getEnd()));
     description.setText(firstFeature.getDescription());
     updateColourButton(mainPanel, colour,
-            (oldcol = fcol = getFeatureStyle(name.getText())));
+            (oldcol = fcol = getFeatureStyle(featureType)));
     Object[] options;
     if (!create)
     {
@@ -386,14 +386,15 @@ public class FeatureRenderer extends
 
     FeaturesFile ffile = new FeaturesFile();
 
-    if (reply == JvOptionPane.OK_OPTION && name.getText().length() > 0)
+    String enteredType = name.getText().trim();
+    if (reply == JvOptionPane.OK_OPTION && enteredType.length() > 0)
     {
       /*
        * update default values only if creating using default values
        */
       if (useLastDefaults)
       {
-        lastFeatureAdded = name.getText().trim();
+        lastFeatureAdded = enteredType;
         lastFeatureGroupAdded = group.getText().trim();
         // TODO: determine if the null feature group is valid
         if (lastFeatureGroupAdded.length() < 1)
@@ -422,7 +423,7 @@ public class FeatureRenderer extends
          * YES_OPTION corresponds to the Amend button
          * need to refresh Feature Settings if type, group or colour changed
          */
-        sf.type = name.getText().trim();
+        sf.type = enteredType;
         sf.featureGroup = group.getText().trim();
         sf.description = description.getText().replaceAll("\n", " ");
         boolean refreshSettings = (!featureType.equals(sf.type) || !featureGroup
@@ -449,12 +450,12 @@ public class FeatureRenderer extends
     else
     // NEW FEATURES ADDED
     {
-      if (reply == JvOptionPane.OK_OPTION && lastFeatureAdded.length() > 0)
+      if (reply == JvOptionPane.OK_OPTION && enteredType.length() > 0)
       {
         for (int i = 0; i < sequences.size(); i++)
         {
           SequenceFeature sf = features.get(i);
-          sf.type = name.getText().trim();
+          sf.type = enteredType;
           // fix for JAL-1538 - always set feature group here
           sf.featureGroup = group.getText().trim();
           sf.description = description.getText().replaceAll("\n", " ");
@@ -462,7 +463,7 @@ public class FeatureRenderer extends
           ffile.parseDescriptionHTML(sf, false);
         }
 
-        setColour(lastFeatureAdded, fcol);
+        setColour(enteredType, fcol);
 
         featuresAdded();