X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=src%2Fjalview%2Fgui%2FScriptWindow.java;h=9211d0fdef8c1e9a17c46b78197d572eb083c48c;hb=0f368572e180ae64ad32158e80c46ca5a6acef96;hp=de31fcfcb13d07b8f16e7ff897f59b8ec75b56a4;hpb=ea990f32cf34a867377d25f7fc05bfbfb15f6fb3;p=jalview.git

diff --git a/src/jalview/gui/ScriptWindow.java b/src/jalview/gui/ScriptWindow.java
index de31fcf..9211d0f 100644
--- a/src/jalview/gui/ScriptWindow.java
+++ b/src/jalview/gui/ScriptWindow.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -29,6 +29,7 @@ import org.jmol.i18n.GT;
 import org.jmol.util.Logger;
 import org.jmol.util.CommandHistory;
 
+// TODO: this class is copied in from jmol 11.0.2 - upgrade to 12.0.2 ?
 public final class ScriptWindow extends JPanel implements ActionListener,
         EnterListener
 {
@@ -53,7 +54,7 @@ public final class ScriptWindow extends JPanel implements ActionListener,
 
   public ScriptWindow(AppJmol appJmol)
   {
-    this.viewer = appJmol.viewer;
+    this.viewer = appJmol.jmb.viewer;
     this.appJmol = appJmol;
 
     setLayout(new BorderLayout());
@@ -258,7 +259,7 @@ public final class ScriptWindow extends JPanel implements ActionListener,
     Object source = e.getSource();
     if (source == closeButton)
     {
-      appJmol.showConsole(false);
+      // appJmol.showConsole(false);
     }
     else if (source == runButton)
     {