X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=src%2Fjalview%2Fio%2FAMSAFile.java;h=f82407e2af0893280839193e524b29747d3628d1;hb=9fc1c4d049a16cccb933e80b5be07ec36e6bda7f;hp=0a4624b3802440c1e3ad80bd0d22f91107190e0f;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git diff --git a/src/jalview/io/AMSAFile.java b/src/jalview/io/AMSAFile.java index 0a4624b..f82407e 100644 --- a/src/jalview/io/AMSAFile.java +++ b/src/jalview/io/AMSAFile.java @@ -1,23 +1,27 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6) - * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - * + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * - * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.io; -import jalview.datamodel.*; +import jalview.datamodel.AlignmentAnnotation; +import jalview.datamodel.AlignmentI; public class AMSAFile extends jalview.io.FastaFile { @@ -60,7 +64,7 @@ public class AMSAFile extends jalview.io.FastaFile out.append(" " + aa.description); } - out.append("\n"); + out.append(newline); int nochunks = Math.min(aa.annotations.length, al.getWidth()) / len + 1; @@ -93,7 +97,7 @@ public class AMSAFile extends jalview.io.FastaFile out.append(ch); } - out.append("\n"); + out.append(newline); } } }