X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=src%2Fjalview%2Fio%2FEBIFetchClient.java;h=0012ffeb78b1ca0bff4b1d16ad31d2a1f26507a6;hb=df7880a58e6b16d65f9ed8dbe4433efffbe8abec;hp=2c829ffc1d9b76f2bdb69d107fe17c8060a81598;hpb=efc31b4a8d5cee63555586804a2b79c06bdb5a14;p=jalview.git

diff --git a/src/jalview/io/EBIFetchClient.java b/src/jalview/io/EBIFetchClient.java
index 2c829ff..0012ffe 100755
--- a/src/jalview/io/EBIFetchClient.java
+++ b/src/jalview/io/EBIFetchClient.java
@@ -18,14 +18,14 @@
 */
 package jalview.io;
 
+import java.io.*;
+
 import org.apache.axis.AxisFault;
 import org.apache.axis.client.*;
 import org.apache.axis.encoding.XMLType;
 import org.apache.axis.encoding.ser.JAFDataHandlerDeserializerFactory;
 import org.apache.axis.encoding.ser.JAFDataHandlerSerializerFactory;
 
-import java.io.*;
-
 import javax.activation.DataHandler;
 
 import javax.xml.namespace.QName;
@@ -120,6 +120,46 @@ public class EBIFetchClient
         }
     }
 
+    public static void main (String [] args)
+    {
+      EBIFetchClient ebi = new EBIFetchClient();
+      String[] result = ebi.fetchData("uniprot:25K89D_SARPE;G6PblobD_HUMAN",
+                           "xml", null);
+
+     try{
+       java.io.PrintWriter out = new java.io.PrintWriter(
+      new java.io.FileWriter("out.xml"));
+
+
+       for(int i=0; i<result.length; i++)
+       {
+         out.println(result[i]);
+       }
+       out.close();
+     }catch(Exception ex){ex.printStackTrace();}
+
+    }
+
+
+    public File fetchDataAsFile(String ids, String f, String s)
+    {
+      String [] data = fetchData(ids, f, s);
+      File outFile = null;
+      try{
+        outFile = File.createTempFile("jalview", ".xml");
+        outFile.deleteOnExit();
+        PrintWriter out = new PrintWriter(new FileOutputStream(outFile));
+        int index=0;
+        while( index < data.length )
+        {
+          out.println(data[index]);
+          index++;
+        }
+        out.close();
+      }catch(Exception ex){}
+      return outFile;
+    }
+
     /**
      * DOCUMENT ME!
      *