X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FAlcodon.java;h=3bd1cbb8aeabb70a97066a54671642ca85d0e854;hb=d7361eaa08dc9af7d996851f39b7a2007d1b8832;hp=9bd0a7f4e9803f393f9e3fc8fc810c6f3701c1ee;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git
diff --git a/src/jalview/schemabinding/version2/Alcodon.java b/src/jalview/schemabinding/version2/Alcodon.java
index 9bd0a7f..3bd1cbb 100644
--- a/src/jalview/schemabinding/version2/Alcodon.java
+++ b/src/jalview/schemabinding/version2/Alcodon.java
@@ -1,285 +1,275 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
- */
-package jalview.schemabinding.version2;
-
-//---------------------------------/
-//- Imported classes and packages -/
-//---------------------------------/
-
-import org.exolab.castor.xml.Marshaller;
-import org.exolab.castor.xml.Unmarshaller;
-
-/**
- * Class Alcodon.
- *
- * @version $Revision$ $Date$
- */
-public class Alcodon implements java.io.Serializable
-{
-
- // --------------------------/
- // - Class/Member Variables -/
- // --------------------------/
-
- /**
- * Field _pos1.
- */
- private long _pos1;
-
- /**
- * keeps track of state for field: _pos1
- */
- private boolean _has_pos1;
-
- /**
- * Field _pos2.
- */
- private long _pos2;
-
- /**
- * keeps track of state for field: _pos2
- */
- private boolean _has_pos2;
-
- /**
- * Field _pos3.
- */
- private long _pos3;
-
- /**
- * keeps track of state for field: _pos3
- */
- private boolean _has_pos3;
-
- // ----------------/
- // - Constructors -/
- // ----------------/
-
- public Alcodon()
- {
- super();
- }
-
- // -----------/
- // - Methods -/
- // -----------/
-
- /**
- */
- public void deletePos1()
- {
- this._has_pos1 = false;
- }
-
- /**
- */
- public void deletePos2()
- {
- this._has_pos2 = false;
- }
-
- /**
- */
- public void deletePos3()
- {
- this._has_pos3 = false;
- }
-
- /**
- * Returns the value of field 'pos1'.
- *
- * @return the value of field 'Pos1'.
- */
- public long getPos1()
- {
- return this._pos1;
- }
-
- /**
- * Returns the value of field 'pos2'.
- *
- * @return the value of field 'Pos2'.
- */
- public long getPos2()
- {
- return this._pos2;
- }
-
- /**
- * Returns the value of field 'pos3'.
- *
- * @return the value of field 'Pos3'.
- */
- public long getPos3()
- {
- return this._pos3;
- }
-
- /**
- * Method hasPos1.
- *
- * @return true if at least one Pos1 has been added
- */
- public boolean hasPos1()
- {
- return this._has_pos1;
- }
-
- /**
- * Method hasPos2.
- *
- * @return true if at least one Pos2 has been added
- */
- public boolean hasPos2()
- {
- return this._has_pos2;
- }
-
- /**
- * Method hasPos3.
- *
- * @return true if at least one Pos3 has been added
- */
- public boolean hasPos3()
- {
- return this._has_pos3;
- }
-
- /**
- * Method isValid.
- *
- * @return true if this object is valid according to the schema
- */
- public boolean isValid()
- {
- try
- {
- validate();
- } catch (org.exolab.castor.xml.ValidationException vex)
- {
- return false;
- }
- return true;
- }
-
- /**
- *
- *
- * @param out
- * @throws org.exolab.castor.xml.MarshalException
- * if object is null or if any SAXException is thrown during
- * marshaling
- * @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the schema
- */
- public void marshal(final java.io.Writer out)
- throws org.exolab.castor.xml.MarshalException,
- org.exolab.castor.xml.ValidationException
- {
- Marshaller.marshal(this, out);
- }
-
- /**
- *
- *
- * @param handler
- * @throws java.io.IOException
- * if an IOException occurs during marshaling
- * @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the schema
- * @throws org.exolab.castor.xml.MarshalException
- * if object is null or if any SAXException is thrown during
- * marshaling
- */
- public void marshal(final org.xml.sax.ContentHandler handler)
- throws java.io.IOException,
- org.exolab.castor.xml.MarshalException,
- org.exolab.castor.xml.ValidationException
- {
- Marshaller.marshal(this, handler);
- }
-
- /**
- * Sets the value of field 'pos1'.
- *
- * @param pos1
- * the value of field 'pos1'.
- */
- public void setPos1(final long pos1)
- {
- this._pos1 = pos1;
- this._has_pos1 = true;
- }
-
- /**
- * Sets the value of field 'pos2'.
- *
- * @param pos2
- * the value of field 'pos2'.
- */
- public void setPos2(final long pos2)
- {
- this._pos2 = pos2;
- this._has_pos2 = true;
- }
-
- /**
- * Sets the value of field 'pos3'.
- *
- * @param pos3
- * the value of field 'pos3'.
- */
- public void setPos3(final long pos3)
- {
- this._pos3 = pos3;
- this._has_pos3 = true;
- }
-
- /**
- * Method unmarshal.
- *
- * @param reader
- * @throws org.exolab.castor.xml.MarshalException
- * if object is null or if any SAXException is thrown during
- * marshaling
- * @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the schema
- * @return the unmarshaled jalview.schemabinding.version2.Alcodo
- */
- public static jalview.schemabinding.version2.Alcodon unmarshal(
- final java.io.Reader reader)
- throws org.exolab.castor.xml.MarshalException,
- org.exolab.castor.xml.ValidationException
- {
- return (jalview.schemabinding.version2.Alcodon) Unmarshaller.unmarshal(
- jalview.schemabinding.version2.Alcodon.class, reader);
- }
-
- /**
- *
- *
- * @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the schema
- */
- public void validate() throws org.exolab.castor.xml.ValidationException
- {
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
- validator.validate(this);
- }
-
-}
+/*
+ * This class was automatically generated with
+ * Castor 1.1, using an XML
+ * Schema.
+ * $Id$
+ */
+
+package jalview.schemabinding.version2;
+
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
+
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
+
+/**
+ * Class Alcodon.
+ *
+ * @version $Revision$ $Date$
+ */
+public class Alcodon implements java.io.Serializable
+{
+
+ // --------------------------/
+ // - Class/Member Variables -/
+ // --------------------------/
+
+ /**
+ * Field _pos1.
+ */
+ private long _pos1;
+
+ /**
+ * keeps track of state for field: _pos1
+ */
+ private boolean _has_pos1;
+
+ /**
+ * Field _pos2.
+ */
+ private long _pos2;
+
+ /**
+ * keeps track of state for field: _pos2
+ */
+ private boolean _has_pos2;
+
+ /**
+ * Field _pos3.
+ */
+ private long _pos3;
+
+ /**
+ * keeps track of state for field: _pos3
+ */
+ private boolean _has_pos3;
+
+ // ----------------/
+ // - Constructors -/
+ // ----------------/
+
+ public Alcodon()
+ {
+ super();
+ }
+
+ // -----------/
+ // - Methods -/
+ // -----------/
+
+ /**
+ */
+ public void deletePos1()
+ {
+ this._has_pos1 = false;
+ }
+
+ /**
+ */
+ public void deletePos2()
+ {
+ this._has_pos2 = false;
+ }
+
+ /**
+ */
+ public void deletePos3()
+ {
+ this._has_pos3 = false;
+ }
+
+ /**
+ * Returns the value of field 'pos1'.
+ *
+ * @return the value of field 'Pos1'.
+ */
+ public long getPos1()
+ {
+ return this._pos1;
+ }
+
+ /**
+ * Returns the value of field 'pos2'.
+ *
+ * @return the value of field 'Pos2'.
+ */
+ public long getPos2()
+ {
+ return this._pos2;
+ }
+
+ /**
+ * Returns the value of field 'pos3'.
+ *
+ * @return the value of field 'Pos3'.
+ */
+ public long getPos3()
+ {
+ return this._pos3;
+ }
+
+ /**
+ * Method hasPos1.
+ *
+ * @return true if at least one Pos1 has been added
+ */
+ public boolean hasPos1()
+ {
+ return this._has_pos1;
+ }
+
+ /**
+ * Method hasPos2.
+ *
+ * @return true if at least one Pos2 has been added
+ */
+ public boolean hasPos2()
+ {
+ return this._has_pos2;
+ }
+
+ /**
+ * Method hasPos3.
+ *
+ * @return true if at least one Pos3 has been added
+ */
+ public boolean hasPos3()
+ {
+ return this._has_pos3;
+ }
+
+ /**
+ * Method isValid.
+ *
+ * @return true if this object is valid according to the schema
+ */
+ public boolean isValid()
+ {
+ try
+ {
+ validate();
+ } catch (org.exolab.castor.xml.ValidationException vex)
+ {
+ return false;
+ }
+ return true;
+ }
+
+ /**
+ *
+ *
+ * @param out
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ */
+ public void marshal(final java.io.Writer out)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ Marshaller.marshal(this, out);
+ }
+
+ /**
+ *
+ *
+ * @param handler
+ * @throws java.io.IOException
+ * if an IOException occurs during marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ */
+ public void marshal(final org.xml.sax.ContentHandler handler)
+ throws java.io.IOException,
+ org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ Marshaller.marshal(this, handler);
+ }
+
+ /**
+ * Sets the value of field 'pos1'.
+ *
+ * @param pos1
+ * the value of field 'pos1'.
+ */
+ public void setPos1(final long pos1)
+ {
+ this._pos1 = pos1;
+ this._has_pos1 = true;
+ }
+
+ /**
+ * Sets the value of field 'pos2'.
+ *
+ * @param pos2
+ * the value of field 'pos2'.
+ */
+ public void setPos2(final long pos2)
+ {
+ this._pos2 = pos2;
+ this._has_pos2 = true;
+ }
+
+ /**
+ * Sets the value of field 'pos3'.
+ *
+ * @param pos3
+ * the value of field 'pos3'.
+ */
+ public void setPos3(final long pos3)
+ {
+ this._pos3 = pos3;
+ this._has_pos3 = true;
+ }
+
+ /**
+ * Method unmarshal.
+ *
+ * @param reader
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @return the unmarshaled jalview.schemabinding.version2.Alcodo
+ */
+ public static jalview.schemabinding.version2.Alcodon unmarshal(
+ final java.io.Reader reader)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ return (jalview.schemabinding.version2.Alcodon) Unmarshaller.unmarshal(
+ jalview.schemabinding.version2.Alcodon.class, reader);
+ }
+
+ /**
+ *
+ *
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ */
+ public void validate() throws org.exolab.castor.xml.ValidationException
+ {
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+ validator.validate(this);
+ }
+
+}