X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=src%2Fjalview%2Fws%2Frest%2Fparams%2FSeqIdVector.java;h=0b19629328ae564c3be7abc30e5b924ad880bf70;hb=3d0101179759ef157b088ea135423cd909512d9f;hp=37426657f38e9e2cc3371b5cfdf701e25dd9bf5f;hpb=b57a02c25e335d033c97f8a6bacd6b54f62bd2b6;p=jalview.git diff --git a/src/jalview/ws/rest/params/SeqIdVector.java b/src/jalview/ws/rest/params/SeqIdVector.java index 3742665..0b19629 100644 --- a/src/jalview/ws/rest/params/SeqIdVector.java +++ b/src/jalview/ws/rest/params/SeqIdVector.java @@ -1,20 +1,23 @@ -/******************************************************************************* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7) - * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle - * +/* + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors + * * This file is part of Jalview. - * + * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - * + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License along with Jalview. If not, see . - *******************************************************************************/ + * + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + */ package jalview.ws.rest.params; import jalview.datamodel.AlignmentI; @@ -24,15 +27,11 @@ import jalview.ws.params.simple.Option; import jalview.ws.rest.InputType; import jalview.ws.rest.NoValidInputDataException; import jalview.ws.rest.RestJob; -import jalview.ws.rest.RestServiceDescription; -import jalview.ws.rest.InputType.molType; import java.io.UnsupportedEncodingException; import java.util.ArrayList; import java.util.Arrays; import java.util.List; -import java.util.regex.Matcher; -import java.util.regex.Pattern; import org.apache.http.entity.mime.content.ContentBody; import org.apache.http.entity.mime.content.StringBody; @@ -47,8 +46,7 @@ public class SeqIdVector extends InputType { public SeqIdVector() { - super(new Class[] - { AlignmentI.class }); + super(new Class[] { AlignmentI.class }); } /** @@ -111,8 +109,8 @@ public class SeqIdVector extends InputType return true; } catch (Exception x) { - warnings.append("Invalid molecule type '" + val - + "'. Must be one of ("); + warnings.append( + "Invalid molecule type '" + val + "'. Must be one of ("); for (molType v : molType.values()) { warnings.append(" " + v); @@ -131,7 +129,8 @@ public class SeqIdVector extends InputType "Separator character between elements of vector", true, ",", sep, Arrays.asList(new String[] { " ", ",", ";", "\t", "|" }), null)); - lst.add(createMolTypeOption("type", "Sequence type", false, type, null)); + lst.add(createMolTypeOption("type", "Sequence type", false, type, + null)); return lst; } }