X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=test%2Fjalview%2Fio%2FAnnotationFileIOTest.java;h=c9b5f4a1f3ea2eca45b57e24c2778a7ebfca9d01;hb=44d74820a0af7a277c10c1eab98b59eb7fceddf6;hp=a63923af60ca5cce0188bfb7b5d5a797648a1a82;hpb=ab22918ab8fc67d30dad1fb1ae0f37e51f49df95;p=jalview.git

diff --git a/test/jalview/io/AnnotationFileIOTest.java b/test/jalview/io/AnnotationFileIOTest.java
index a63923a..c9b5f4a 100644
--- a/test/jalview/io/AnnotationFileIOTest.java
+++ b/test/jalview/io/AnnotationFileIOTest.java
@@ -36,8 +36,7 @@ import org.testng.annotations.Test;
 public class AnnotationFileIOTest
 {
 
-  static String TestFiles[][] =
-  {
+  static String TestFiles[][] = {
       { "Test example annotation import/export", "examples/uniref50.fa",
           "examples/testdata/example_annot_file.jva" },
       { "Test multiple combine annotation statements import/export",
@@ -52,7 +51,7 @@ public class AnnotationFileIOTest
       { "Test hiding/showing of insertions on sequence_ref",
           "examples/uniref50.fa", "examples/testdata/uniref50_seqref.jva" } };
 
-  @Test(groups ={ "Functional" })
+  @Test(groups = { "Functional" })
   public void exampleAnnotationFileIO() throws Exception
   {
     for (String[] testPair : TestFiles)
@@ -71,13 +70,12 @@ public class AnnotationFileIOTest
       FormatAdapter rf = new FormatAdapter();
 
       AlignmentI al = rf.readFile(ff, AppletFormatAdapter.FILE,
-              new IdentifyFile().Identify(ff, AppletFormatAdapter.FILE));
+              new IdentifyFile().identify(ff, AppletFormatAdapter.FILE));
 
       // make sure dataset is initialised ? not sure about this
       for (int i = 0; i < al.getSequencesArray().length; ++i)
       {
-        al.getSequenceAt(i).setDatasetSequence(
-                al.getSequenceAt(i).createDatasetSequence());
+        al.getSequenceAt(i).createDatasetSequence();
       }
       assertNotNull("Couldn't read supplied alignment data.", al);
       return al;