X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=inline;f=test%2Fjalview%2Fio%2Fgff%2FGffTests.java;h=393f2ce31eb6c504e8c96000b10a6fc8b6072909;hb=27c2e79ddd7e9913b385325798f2ed8a8b084dca;hp=2cd3887983c458cc8c9ab2656f7babe8cc368b01;hpb=5f4e1e4c330b045e9c8bce28ee132a0fca3834d8;p=jalview.git diff --git a/test/jalview/io/gff/GffTests.java b/test/jalview/io/gff/GffTests.java index 2cd3887..393f2ce 100644 --- a/test/jalview/io/gff/GffTests.java +++ b/test/jalview/io/gff/GffTests.java @@ -34,8 +34,8 @@ import jalview.datamodel.SequenceDummy; import jalview.datamodel.SequenceI; import jalview.gui.AlignFrame; import jalview.gui.JvOptionPane; +import jalview.io.DataSourceType; import jalview.io.FileLoader; -import jalview.io.FormatAdapter; import java.util.List; @@ -67,7 +67,7 @@ public class GffTests { String proteinSeq = ">prot1/10-16\nYCWRSGA"; AlignFrame af = new FileLoader(false).LoadFileWaitTillLoaded( - proteinSeq, FormatAdapter.PASTE); + proteinSeq, DataSourceType.PASTE); /* * exonerate GFF output mapping residues 11-15 (CWRSG) @@ -75,7 +75,7 @@ public class GffTests */ String exonerateGff = "##gff-version 2\n" + "prot1\tprotein2genome\tsimilarity\t11\t15\t99\t-\t.\talignment_id 0 ; Target dna1 ; Align 11 24 5"; - af.loadJalviewDataFile(exonerateGff, FormatAdapter.PASTE, null, null); + af.loadJalviewDataFile(exonerateGff, DataSourceType.PASTE, null, null); /* * check we have a mapping from prot1 to SequenceDummy 'dna1'