-Uses of Class compbio.runner.msa.Muscle -

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-Uses of Class
compbio.runner.msa.Muscle

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-Packages that use Muscle
compbio.runner.msa	Wrappers for native executables for multiple sequence alignment (msa)
compbio.ws.server

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-Uses of Muscle in compbio.runner.msa
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Methods in compbio.runner.msa that return Muscle
- Muscle Muscle.setInput(java.lang.String inFile) - -
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- Muscle Muscle.setOutput(java.lang.String outFile) - -
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Methods in compbio.runner.msa that return types with arguments of type Muscle
- Limit<Muscle> Muscle.getLimit(java.lang.String presetName) - -
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- LimitsManager<Muscle> Muscle.getLimits() - -
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-Uses of Muscle in compbio.ws.server
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Methods in compbio.ws.server that return types with arguments of type Muscle
- Limit<Muscle> MuscleWS.getLimit(java.lang.String presetName) - -
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- LimitsManager<Muscle> MuscleWS.getLimits() - -
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- PresetManager<Muscle> MuscleWS.getPresets() - -
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- RunnerConfig<Muscle> MuscleWS.getRunnerOptions() - -
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Method parameters in compbio.ws.server with type arguments of type Muscle
- java.lang.String MuscleWS.customAlign(java.util.List<FastaSequence> sequences, - java.util.List<Option<Muscle>> options) - -
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- java.lang.String MuscleWS.presetAlign(java.util.List<FastaSequence> sequences, - Preset<Muscle> preset) - -
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