X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=binaries%2FlinuxAMD64%2Ffasta34%2Ftest2.bat;fp=binaries%2FlinuxAMD64%2Ffasta34%2Ftest2.bat;h=0000000000000000000000000000000000000000;hb=49bd63da0cc2d713024e3bea5d9f637aba4c5125;hp=37d029a4d476b345d51564ebc9ab70d73ad5ec99;hpb=f500c782a6b1aa1bfcc8aae17e466b35fe59624e;p=jabaws.git

diff --git a/binaries/linuxAMD64/fasta34/test2.bat b/binaries/linuxAMD64/fasta34/test2.bat
deleted file mode 100644
index 37d029a..0000000
--- a/binaries/linuxAMD64/fasta34/test2.bat
+++ /dev/null
@@ -1,78 +0,0 @@
-rem ""
-rem "starting fasta34_t - protein on win32"
-rem ""
-fasta34_t -q -m 6 -Z 100000 mgstm1.aa:1-100 q > test_m1.ok2_t.html
-fasta34_t -S -q -z 11 -O test_m1.ok2_t_p25 -s P250 mgstm1.aa:100-218 q
-rem "done"
-rem "starting fastxy34_t"
-fastx34_t -m 9c -S -q mgtt2_x.seq q 1 > test_t2.xk1_t
-fasty34_t -S -q mgtt2_x.seq q > test_t2.yk2_t
-fastx34_t -m 9c -S -q -z 2 mgstm1.esq a > test_m1.xk2_tz2
-fasty34_t -S -q -z 2 mgstm1.esq a > test_m1.yk2_tz2
-rem "done"
-rem "starting fastxy34_t rev"
-fastx34_t -m 9c -q -m 5 mgstm1.rev q > test_m1.xk2r_t
-fasty34_t -q -m 5 -M 200-300 -z 2 mgstm1.rev q > test_m1.yk2r_tz2
-fasty34_t -q -m 5 -z 11 mgstm1.rev q > test_m1.yk2rz11_t
-rem "done"
-rem "starting ssearch34_t"
-ssearch34_t -m 9c -S -z 3 -q mgstm1.aa  q > test_m1.ss_tz3
-ssearch34_t -q -M 200-300 -z 2 -Z 100000 -s P250 mgstm1.aa q > test_m1.ss_t_p25
-rem "starting ssearch34_t"
-ssearch34sse2_t -m 9c -S -z 3 -q mgstm1.aa  q > test_m1.ss_tz3sse2
-ssearch34sse2_t -q -M 200-300 -z 2 -Z 100000 -s P250 mgstm1.aa q > test_m1.ss_t_p25sse2
-rem "done"
-rem "starting prss34"
-prss34_t -q -k 1000 -A mgstm1.aa xurt8c.aa  > test_m1.rss
-prfx34_t -q -k 1000 -A mgstm1.esq xurt8c.aa > test_m1.rfx
-rem "done"
-rem "starting fasta34_t - DNA"
-fasta34_t -S -q -z 2 mgstm1.seq %M 4 > test_m1.ok4_tz2
-fasta34_t -S -q mgstm1.rev %M 4 > test_m1.ok4r_t
-rem "done"
-rem "starting tfastxy34_t"
-tfastx34_t -m 9c -q -i -3 -m 6 mgstm1.aa %p > test_m1.tx2_t.html
-tfasty34_t -q -i -3 -N 5000 mgstm1.aa %p > test_m1.ty2_t
-rem "done"
-rem "starting fastf34_t"
-fastf34_t -q m1r.aa q > test_mf.ff_t
-fastf34 -q m1r.aa q > test_mf.ff_s
-rem "done"
-rem "starting tfastf34_t"
-tfastf34_t -q m1r.aa %r > test_mf.tf_tr
-rem "done"
-rem "starting fasts34_t"
-fasts34_t -q -V '*?@' ngts.aa q > test_m1.fs1_t
-fasts34_t -q ngt.aa q > test_m1.fs_t
-fasts34_t -q -n mgstm1.nts m > test_m1.nfs_t
-rem "done"
-rem "starting tfasts34_t"
-tfasts34_t -q n0.aa %r > test_m1.ts_r
-rem "done"
-rem "starting fasta34 - protein"
-fasta34 -q -z 2 mgstm1.aa q 1 > test_m1.ok1z2
-fasta34 -q -s P250 mgstm1.aa q > test_m1.ok2_p25 
-rem "done"
-rem "starting fastx3"
-fastx34 -m 9c -q mgstm1.esq q > test_m1.ok2x 
-rem "done"
-rem "starting fasty3"
-fasty34 -q mgstm1.esq q > test_m1.ok2y 
-rem "done"
-rem "starting fasta34 - DNA "
-fasta34 -m 9c -q mgstm1.seq M 4 > test_m1.ok4 
-rem "done"
-rem "starting ssearch3"
-ssearch34 -S -q -z 2 mgstm1.aa q > test_m1.ss_z2
-ssearch34 -q -s P250 mgstm1.aa q > test_m1.ss_p25 
-ssearch34sse2 -S -q -z 2 mgstm1.aa q > test_m1.ss_z2_sse2
-ssearch34sse2 -q -s P250 mgstm1.aa q > test_m1.ss_p25_sse2 
-rem "done"
-rem "starting tfastxy3"
-tfastx34 -q mgstm1.aa M > test_m1.tx2 
-tfasty34 -m 9c -q mgstm1.aa M > test_m1.ty2 
-rem "done"
-rem "starting fasts34"
-fasts34 -q -V '@?*' ngts.aa q > test_m1.fs1
-fasts34 -q ngt.aa q > test_m1.fs
-rem "done"