X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=binaries%2Fsrc%2Fdisembl%2FTisean_3.0.1%2Fsource_c%2Fxzero.c;fp=binaries%2Fsrc%2Fdisembl%2FTisean_3.0.1%2Fsource_c%2Fxzero.c;h=3ec3042e6d7c1d6958450e7a12d4cda8e842202e;hb=a17c780665c109829426e062df4d75ff950725e0;hp=0000000000000000000000000000000000000000;hpb=f47da0247a9f9a8ac55571234064a0d3ded06b6c;p=jabaws.git diff --git a/binaries/src/disembl/Tisean_3.0.1/source_c/xzero.c b/binaries/src/disembl/Tisean_3.0.1/source_c/xzero.c new file mode 100644 index 0000000..3ec3042 --- /dev/null +++ b/binaries/src/disembl/Tisean_3.0.1/source_c/xzero.c @@ -0,0 +1,237 @@ +/* + * This file is part of TISEAN + * + * Copyright (c) 1998-2007 Rainer Hegger, Holger Kantz, Thomas Schreiber + * + * TISEAN is free software; you can redistribute it and/or modify + * it under the terms of the GNU General Public License as published by + * the Free Software Foundation; either version 2 of the License, or + * (at your option) any later version. + * + * TISEAN is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with TISEAN; if not, write to the Free Software + * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA + */ +/*Author: Rainer Hegger. Last modified: Sep 4, 1999 */ +#include +#include +#include +#include +#include "routines/tsa.h" + +#define WID_STR "Estimates the average cross forecast error for a zeroth\n\t\ +order fit between two series given as two columns of one file." + +#ifndef _MATH_H +#include +#endif + +/*number of boxes for the neighbor search algorithm*/ +#define NMAX 128 + +unsigned int nmax=(NMAX-1); +long **box,*list; +unsigned long *found; +double *series1,*series2; +double interval,min,epsilon; + +char epsset=0; +char *infile=NULL; +char *outfile=NULL,stdo=1; +char *COLUMNS=NULL; +unsigned int DIM=3,DELAY=1; +unsigned int verbosity=0xff; +int MINN=30,STEP=1; +double EPS0=1.e-3,EPSF=1.2; +unsigned long LENGTH=ULONG_MAX,exclude=0,CLENGTH=ULONG_MAX; + +void show_options(char *progname) +{ + what_i_do(progname,WID_STR); + fprintf(stderr," Usage: %s [options]\n",progname); + fprintf(stderr," Options:\n"); + fprintf(stderr,"Everything not being a valid option will be interpreted" + " as a possible" + " datafile.\nIf no datafile is given stdin is read. Just - also" + " means stdin\n"); + fprintf(stderr,"\t-l # of data to use [default: whole file]\n"); + fprintf(stderr,"\t-x # of lines to be ignored [default: 0]\n"); + fprintf(stderr,"\t-c columns to read [default: 1,2]\n"); + fprintf(stderr,"\t-m embedding dimension [default: 3]\n"); + fprintf(stderr,"\t-d delay [default: 1]\n"); + fprintf(stderr,"\t-n # of reference points [default: length]\n"); + fprintf(stderr,"\t-k minimal number of neighbors for the fit " + "[default: 30]\n"); + fprintf(stderr,"\t-r neighborhoud size to start with " + "[default: (data interval)/1000]\n"); + fprintf(stderr,"\t-f factor to increase size [default: 1.2]\n"); + fprintf(stderr,"\t-s steps to forecast [default: 1]\n"); + fprintf(stderr,"\t-o output file [default: 'datafile.cze'," + " without -o: stdout]\n"); + fprintf(stderr,"\t-V verbosity level [default: 1]\n\t\t" + "0='only panic messages'\n\t\t" + "1='+ input/output messages'\n"); + fprintf(stderr,"\t-h show these options\n"); + exit(0); +} + +void scan_options(int n,char **in) +{ + char *out; + + if ((out=check_option(in,n,'l','u')) != NULL) + sscanf(out,"%lu",&LENGTH); + if ((out=check_option(in,n,'x','u')) != NULL) + sscanf(out,"%lu",&exclude); + if ((out=check_option(in,n,'c','s')) != NULL) + COLUMNS=out; + if ((out=check_option(in,n,'m','u')) != NULL) + sscanf(out,"%u",&DIM); + if ((out=check_option(in,n,'d','u')) != NULL) + sscanf(out,"%u",&DELAY); + if ((out=check_option(in,n,'n','u')) != NULL) + sscanf(out,"%lu",&CLENGTH); + if ((out=check_option(in,n,'k','u')) != NULL) + sscanf(out,"%u",&MINN); + if ((out=check_option(in,n,'r','f')) != NULL) { + epsset=1; + sscanf(out,"%lf",&EPS0); + } + if ((out=check_option(in,n,'f','f')) != NULL) + sscanf(out,"%lf",&EPSF); + if ((out=check_option(in,n,'s','u')) != NULL) + sscanf(out,"%u",&STEP); + if ((out=check_option(in,n,'V','u')) != NULL) + sscanf(out,"%u",&verbosity); + if ((out=check_option(in,n,'o','o')) != NULL) { + stdo=0; + if (strlen(out) > 0) + outfile=out; + } +} + +double make_fit(unsigned long act,unsigned long number,unsigned long istep) +{ + double casted=0.0; + int i; + + for (i=0;i= MINN) { + for (j=1;j<=STEP;j++) + error[j-1] += make_fit(i,actfound,j); + done[i]=1; + } + alldone &= done[i]; + } + } + if (stdo) { + if (verbosity&VER_INPUT) + fprintf(stderr,"Writing to stdout\n"); + for (i=0;i