X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=build.xml;h=189260fd78764aa5af8f8752cb47e4fa7724f8f5;hb=18f3cccd416493708352f425317f5861b6ee190d;hp=4ab32577020d99b342f64131c957719393309fa0;hpb=df1dc2d6348d3380bdc9c59132a21253f236f30a;p=jalview.git

diff --git a/build.xml b/build.xml
index 4ab3257..189260f 100755
--- a/build.xml
+++ b/build.xml
@@ -9,6 +9,8 @@
     </fileset>
   </classpath>
 </taskdef>
+
+
     <!-- utils is a class path to additional utilities needed for
     building docs, jars and webstart stuff -->
 
@@ -36,6 +38,7 @@
         </fileset> -->
       </path>
 
+      <property name="JALVIEW_VERSION" value="2.07"/>
       <property name="" value=""/>
       <property name="libDir" value="lib"/>
       <property name="resourceDir" value="resources"/>
@@ -64,6 +67,10 @@
           <include name="*.jar"/>
           <include name="**/*.jar"/>
         </fileset>
+        	<fileset dir="../VamsasClient/packages">
+        		<include name="*.jar"/>
+       			<include name="**/*.jar"/>
+		</fileset>
 <!--        <fileset dir="old_lib_signed">
 <include name="lib_axis.jar"/>
 
@@ -78,6 +85,22 @@
       -->
     </target>
 
+
+    <taskdef classpath="utils/roxes-ant-tasks-1.2-2004-01-30.jar" resource="com/roxes/tools/ant/taskdefs.properties"/>
+    <target name="buildPropertiesFile" depends="init">
+      <tstamp prefix="build">
+        <format property="date" pattern="dd MMMM yyyy"/>
+      </tstamp>
+      <properties file="${outputDir}/.build_properties">
+        <header>
+          ---Jalview Build Details---
+        </header>
+        <property name="VERSION" value="${JALVIEW_VERSION}"/>
+        <property name="BUILD_DATE" value="${build.date}"/>
+      </properties>
+    </target>
+
+
     <target name="clean" depends="init">
       <!-- not efficient yet. -->
       <delete dir="${outputDir}"/>
@@ -105,21 +128,28 @@
       <mkdir dir="${outputDir}"/>
       <copy todir="${outputDir}">
         <fileset dir=".">
-
           <include name="${docDir}/**/*.*"/>
           <include name="${helpDir}/**/*.*"/>
-          <include name="${libDir}/*.*"/>
+          <include name="${libDir}/*.jar"/>
         </fileset>
         <fileset dir="${resourceDir}">
           <include name="**/*.*"/>
         </fileset>
+      	<fileset dir="../VamsasClient/packages/">
+     	  <include name="**/*.jar"/>
+      	</fileset>
       </copy>
     </target>
 
     <target name="build" depends="prepare">
       <!-- not efficient yet. -->
-      <javac source="1.4" target="1.4" srcdir="${sourceDir}" destdir="${outputDir}"
-      classpathref="build.classpath" />
+      <javac source="1.4" target="1.4"
+        srcdir ="${sourceDir}"
+        destdir="${outputDir}"
+      classpathref="build.classpath">
+      <exclude name="jalview/*applet*"/>
+       <exclude name="com/stevesoft/**"/>
+      </javac>
     </target>
     <target name="buildindices" depends="init, prepare"
     unless="help.uptodate">
@@ -133,12 +163,16 @@
     </java>
     </target>
 
-    <target name="makejars" depends="build, buildindices">
+    <target name="makejars" depends="build, buildPropertiesFile, buildindices">
       <!-- make the package jar -->
       <mkdir dir="${packageDir}"/>
 
       <jar destfile="${packageDir}/${outputJar}">
+        <manifest>
+             <attribute name="Main-Class" value="jalview.bin.Jalview"/>
+        </manifest>
         <fileset dir="${outputDir}/">
+          <exclude name="cache*/**"/>
           <exclude name="*.jar" />
           <exclude name="*.jar.*" />
           <exclude name="**/*.jar" />
@@ -169,18 +203,29 @@
       <taskdef classpathref="build.classpath" resource="com/roxes/tools/ant/taskdefs.properties"/>
 
       <!--    codebase="http://www.jalview.org/jalview/webstart" -->
-      <jnlp toFile="${packageDir}/Jalview.jnlp" href="Jalview.jnlp"
+      <jnlp toFile="${packageDir}/jalview.jnlp" href="jalview.jnlp"
       codebase="${WebStartLocation}">
       <information>
         <title>Jalview</title>
-        <vendor>Barton Group</vendor>
-        <homepage href="www.jalview.org"/>
+        <vendor>The Barton Group</vendor>
+        <homepage href="http://www.jalview.org"/>
         <description>Jalview Multiple Alignment Editor</description>
         <description kind="short">Jalview</description>
-        <icon href="BartonGroupBanner.gif"/>
-      </information>
+        <icon href="logo_big.gif"/>
+        <offline_allowed/>
+	<!--
+	<association mime-type="application-x/ext-file" extensions="fa"/>
+        <association mime-type="application-x/ext-file" extensions="fasta"/>
+        <association mime-type="application-x/ext-file" extensions="fastq"/>
+        <association mime-type="application-x/ext-file" extensions="blc"/>
+        <association mime-type="application-x/ext-file" extensions="msf"/>
+        <association mime-type="application-x/ext-file" extensions="pfam"/>
+        <association mime-type="application-x/ext-file" extensions="aln"/>
+        <association mime-type="application-x/ext-file" extensions="pir"/>
+	-->
+       </information>
         <resources>
-          <j2se version="1.3+"/>
+          <j2se version="1.4+"/>
           <fileset dir="${packageDir}">
             <include name="jalview.jar"/>
           </fileset>
@@ -188,6 +233,7 @@
             <include name="*.jar"/>
             <exclude name="jalview.jar"/>
           </fileset>
+          <property name="jalview.version" value="${JALVIEW_VERSION}"/>
         </resources>
         <application_desc main_class="jalview.bin.Jalview">
           </application_desc>
@@ -258,7 +304,7 @@
   <!-- jalopy code reformatter -->
   <target name="sourcescrub" depends="init,build">
     <jalopy destdir="jsrc" classpathref="run.classpath"
-      convention="jalviewCodeConvention.xml">
+      convention="jalview-jalopy.xml">
       <fileset dir="${sourceDir}">
         <include name="*.java"/>
         <include name="**/*.java"/>
@@ -267,4 +313,45 @@
       </jalopy>
   </target>
 
+
+
+  <!-- Compile, package and obfuscate Jalview Applet -->
+  <target name="makeApplet" depends="obfuscate"/>
+
+  <target name="compileApplet" depends="init,clean">
+    <mkdir dir="${outputDir}"/>
+    <javac source="1.2" target="1.1" srcdir="${sourceDir}" destdir="${outputDir}"
+       includes="jalview/analysis/**,jalview/appletgui/**,jalview/datamodel/**jalview/jbappletgui/**,jalview/math/**,jalview/schemes/**"
+       excludes="ext/**,MCview/**,org/**,vamsas/**"/>
+  </target>
+
+  <target name="packageApplet" depends="compileApplet, buildPropertiesFile">
+  <copy file="${resourceDir}/images/idwidth.gif" toFile="${outputDir}/images/idwidth.gif"/>
+       <jar destfile="in.jar">
+        <manifest>
+            <attribute name="Main-Class" value="jalview.bin.JalviewLite"/>
+        </manifest>
+        <fileset dir="${outputDir}">
+          <include name="com/**"/>
+          <include name="MCview/**"/>
+          <include name="jalview/**"/>
+          <include name=".build_properties"/>
+          <include name="images/idwidth.gif"/>
+        </fileset>
+      </jar>
+  </target>
+
+  <target name="obfuscate" depends="packageApplet">
+    <taskdef resource="proguard/ant/task.properties" classpath="utils/proguard.jar" />
+    <proguard>
+      -libraryjars "${java.home}/lib/rt.jar"
+      -injars      in.jar
+      -outjars     jalviewApplet.jar
+      -keep public class jalview.bin.JalviewLite
+       { public * ; }
+    </proguard>
+    <delete file="in.jar"/>
+  </target>
+
+
 </project>